Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os06t0107000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20680.1 | Os06t0107000-01 | AT4G25680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G319400.1 | Wheat | plastid | 65.0 | 64.62 |
| TraesCS1D01G319200.1 | Wheat | plastid | 65.0 | 64.62 |
| TraesCS1B01G331700.1 | Wheat | plastid | 64.71 | 64.52 |
| EES19766 | Sorghum | plastid | 66.76 | 64.31 |
| Zm00001d038606_P001 | Maize | plastid | 62.06 | 61.34 |
| HORVU1Hr1G066510.7 | Barley | mitochondrion | 63.53 | 61.02 |
| PGSC0003DMT400041419 | Potato | cytosol | 20.0 | 54.4 |
| GSMUA_Achr6P00560_001 | Banana | plastid | 46.47 | 46.61 |
| VIT_19s0014g05110.t01 | Wine grape | plastid | 43.24 | 43.36 |
| Solyc12g005240.1.1 | Tomato | plastid | 40.59 | 42.99 |
| PGSC0003DMT400056133 | Potato | plastid | 40.0 | 41.85 |
| CDY43066 | Canola | plastid | 40.29 | 41.27 |
| KRH22230 | Soybean | plastid | 40.88 | 41.0 |
| CDY53616 | Canola | plastid | 40.59 | 40.83 |
| Bra023936.1-P | Field mustard | plastid | 40.0 | 40.24 |
| AT3G20680.1 | Thale cress | plastid | 39.71 | 39.94 |
| KRH27109 | Soybean | plastid | 40.29 | 39.6 |
Protein Annotations
| EnsemblPlants:Os05t0500400-01 | EnsemblPlantsGene:Os05g0500400 | EntrezGene:4339230 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF1995 | PANTHER:PTHR36365 | PFAM:PF09353 |
| ProteinID:AAT93864.1 | ProteinID:BAF17877.1 | ProteinID:BAS94756.1 | ProteinID:EEE64256.1 | RefSeq:XP_015637947.1 | SEG:seg |
| UniParc:UPI0000403626 | UniProt:Q6AUW4 | MapMan:35.2 | : | : | : |
Description
Domain of unknown function DUF1995 domain containing protein. (Os05t0500400-01)
Coordinates
chr5:-:24623392..24624580
Molecular Weight (calculated)
36401.6 Da
IEP (calculated)
10.617
GRAVY (calculated)
-0.316
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSFLNTPP SKLAPKPSFP PPSRQFAPPQ RQRSLLHLSL LLREQQPPRP VRSSSSTQAG AAPSPPSSRE EAVSQARSCL AAALRKPLGK QRKQQRQPRF
101: RAEIPVVDDS PGSLARLASD VFSSGLGLSR KGGGGGAPAR LLLVWPSSEE MGVALREPHD WGESTAHAQL DAVAPDALSS CDAAVFLAPG RSQVEKMKAA
201: ADALDTKPVV MFNPAWSFDE EEEGFAGGAR GFVGSFSVVY SFTGLEVRGL LSKKKGVLLR CVDGGRFGGE SWVLMVEDDA AAPASEQFKV VSRLKRRPTI
301: GEVETMLYNV MAANSPVTKS ARFLRGLVSN VTGGRKEKKQ
101: RAEIPVVDDS PGSLARLASD VFSSGLGLSR KGGGGGAPAR LLLVWPSSEE MGVALREPHD WGESTAHAQL DAVAPDALSS CDAAVFLAPG RSQVEKMKAA
201: ADALDTKPVV MFNPAWSFDE EEEGFAGGAR GFVGSFSVVY SFTGLEVRGL LSKKKGVLLR CVDGGRFGGE SWVLMVEDDA AAPASEQFKV VSRLKRRPTI
301: GEVETMLYNV MAANSPVTKS ARFLRGLVSN VTGGRKEKKQ
001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
Arabidopsis Description
AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.