Factsheet for TraesCS1B01G331700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT3G20680.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT3G20680.1	TraesCSU01G065800.1	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G319200.1	Wheat	plastid	96.19	95.91
TraesCS1A01G319400.1	Wheat	plastid	95.01	94.74
HORVU1Hr1G066510.7	Barley	mitochondrion	82.11	79.1
Os05t0500400-01	Rice	plastid	64.52	64.71
EES19766	Sorghum	plastid	65.98	63.74
Zm00001d038606_P001	Maize	plastid	62.46	61.92
PGSC0003DMT400041419	Potato	cytosol	18.48	50.4
GSMUA_Achr6P00560_001	Banana	plastid	46.33	46.61
VIT_19s0014g05110.t01	Wine grape	plastid	43.7	43.95
Solyc12g005240.1.1	Tomato	plastid	40.18	42.68
PGSC0003DMT400056133	Potato	plastid	40.47	42.46
KRH22230	Soybean	plastid	41.64	41.89
CDY43066	Canola	plastid	40.18	41.27
KRH27109	Soybean	plastid	41.64	41.04
CDY53616	Canola	plastid	40.47	40.83
Bra023936.1-P	Field mustard	plastid	39.88	40.24
AT3G20680.1	Thale cress	plastid	39.59	39.94

Protein Annotations

EnsemblPlants:TraesCS1B01G331700.1	EnsemblPlantsGene:TraesCS1B01G331700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:DUF1995	PANTHER:PTHR36365	PFAM:PF09353	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:557918246..557919271

Molecular Weight (calculated)

36718.6 Da

IEP (calculated)

10.577

GRAVY (calculated)

-0.189

Length

341 amino acids

Sequence
(BLAST)

001: MALCLSNPPP SSKIALKAPV PPLPNRSFLF PPPRLPALQV ALLRGPPPGR VQSSSAPSAP PTDGFPTPPS SREEAVAQAR SCLATALRKP LNNSLPARKL
101: KKQQRQPRFR AEIPVVDDSP GSLARLAFDV FSGLGVSRKG SPARLLLVWP SAEDLAVAVR EFKNWGDTSA LAHAQLDSVA PDALSACDAA VFLSPGRSQV
201: EKLRAAVNAL DPRPAVLFNP GWSYEVEEEG FGGIAKGFVG SFNVVYSFMG LEVKGLLSKK KGVLLRCVEG GRFGGESWVL MMEGEEKEPE LKVVSRMKRR
301: PTVGEVENMM YNLMAANSPV TKSARFLREL VSNVTGRKGK Q

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.