Factsheet for TraesCS1D01G319200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT3G20680.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT3G20680.1	TraesCSU01G065800.1	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G319400.1	Wheat	plastid	96.2	96.2
TraesCS1B01G331700.1	Wheat	plastid	95.91	96.19
HORVU1Hr1G066510.7	Barley	mitochondrion	81.29	78.53
Os05t0500400-01	Rice	plastid	64.62	65.0
EES19766	Sorghum	plastid	64.91	62.89
Zm00001d038606_P001	Maize	plastid	61.7	61.34
PGSC0003DMT400041419	Potato	cytosol	18.13	49.6
GSMUA_Achr6P00560_001	Banana	plastid	45.61	46.02
VIT_19s0014g05110.t01	Wine grape	plastid	42.4	42.77
Solyc12g005240.1.1	Tomato	plastid	39.47	42.06
PGSC0003DMT400056133	Potato	plastid	39.77	41.85
KRH22230	Soybean	plastid	41.23	41.59
KRH27109	Soybean	plastid	41.23	40.75
CDY43066	Canola	plastid	39.47	40.66
CDY53616	Canola	plastid	39.77	40.24
Bra023936.1-P	Field mustard	plastid	39.18	39.65
AT3G20680.1	Thale cress	plastid	38.6	39.05

Protein Annotations

EnsemblPlants:TraesCS1D01G319200.1	EnsemblPlantsGene:TraesCS1D01G319200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:DUF1995	PANTHER:PTHR36365	PFAM:PF09353	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:413411872..413412900

Molecular Weight (calculated)

36768.6 Da

IEP (calculated)

10.653

GRAVY (calculated)

-0.195

Length

342 amino acids

Sequence
(BLAST)

001: MALSLSNPPP SSKIALKAPV PPLPNRSFLF PPPRLPALHV TLLLRGPPPG RVQSSSAPSA PLTDGSPTPP SSREEAVAQA RSCLATALRK PLNNSLPARK
101: LKKQQRQARF RAEIPVVDDS PGSLARLAFD VFSGLGVSRK GSPARLLLVW PSAEDQAVAV REFKSWGDTS ALAHAQLDTV APDALSACDA AVFLSPGRPQ
201: VEKLRAAVNA LDPRPAVLFN PGWSYEVEEE GFGGVAKGFV GSFNVVYSFM GLEVKGLLSK KKGVLLRCVE GGRFGGESWV LMMEDGEKEP ELKVVSRMKR
301: RPTVGEVENM MYNLMAANSP VTKSARFLRE LVSNVTGRKG KQ

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.