Factsheet for Zm00001d038606_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	Zm00001d045580_P001	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19766	Sorghum	plastid	84.01	81.87
TraesCS1B01G331700.1	Wheat	plastid	61.92	62.46
Os05t0500400-01	Rice	plastid	61.34	62.06
TraesCS1A01G319400.1	Wheat	plastid	61.63	61.99
TraesCS1D01G319200.1	Wheat	plastid	61.34	61.7
HORVU1Hr1G066510.7	Barley	mitochondrion	60.17	58.47
PGSC0003DMT400041419	Potato	cytosol	18.31	50.4
GSMUA_Achr6P00560_001	Banana	plastid	44.77	45.43
VIT_19s0014g05110.t01	Wine grape	plastid	41.86	42.48
Solyc12g005240.1.1	Tomato	plastid	37.79	40.5
KRH22230	Soybean	plastid	39.53	40.12
CDY43066	Canola	plastid	38.66	40.06
CDY53616	Canola	plastid	38.95	39.65
PGSC0003DMT400056133	Potato	plastid	37.21	39.38
Bra023936.1-P	Field mustard	plastid	38.66	39.35
AT3G20680.1	Thale cress	plastid	38.37	39.05
KRH27109	Soybean	plastid	38.37	38.15

Protein Annotations

EMBL:EU958117	EnsemblPlants:Zm00001d038606_P001	EnsemblPlants:Zm00001d038606_T001	EnsemblPlantsGene:Zm00001d038606	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:DUF1995	PANTHER:PTHR36365
PFAM:PF09353	ProteinID:AQK87022.1	SEG:seg	UniParc:UPI000182C91F	UniProt:B6SZF2	MapMan:35.2

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:B6SZF2]

Coordinates

chr6:-:160891700..160892734

Molecular Weight (calculated)

36472.8 Da

IEP (calculated)

10.428

GRAVY (calculated)

-0.187

Length

344 amino acids

Sequence
(BLAST)

001: MASNNLLNLP PFKIALNPPP PPLPTRPSVF LAPRQIPPCR SLLRSKPPPR QGVRSSTSPQ LDTANTPSPP SSRQEAVAQA RSCLATALQK PLNSSIPLKR
101: QRQPRFRAEI PVVDESPGSL ARLAFDVLSG GAGASRKGAP ARLLLIWPSA EALSVALREF EDQGDSATAH ARLGSMAPDA LGACDAAVFL ATGPAQVEQV
201: KAAAAALEPR PVVLFNPSWS FDEEGDGEKF GAGARGFVGS FDVVYSFTGL EVRGLLSKKR GVLLRCAEAG RFGGEGWVLM VENDGGASDG QEFKVVSRLK
301: KRPTIGEVES MLYNIMAANS PVTKSARFLR EIVSNVTGAK SKAQ

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.