Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018924 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G20680.1 | PGSC0003DMT400018924 | AT4G25680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056133 | Potato | plastid | 96.8 | 37.23 |
| Solyc12g005240.1.1 | Tomato | plastid | 92.0 | 35.83 |
| VIT_19s0014g05110.t01 | Wine grape | plastid | 73.6 | 27.14 |
| KRH22230 | Soybean | plastid | 69.6 | 25.66 |
| KRH27109 | Soybean | plastid | 70.4 | 25.43 |
| GSMUA_Achr6P00560_001 | Banana | plastid | 65.6 | 24.19 |
| CDY43066 | Canola | plastid | 62.4 | 23.49 |
| AT3G20680.1 | Thale cress | plastid | 62.4 | 23.08 |
| Bra023936.1-P | Field mustard | plastid | 61.6 | 22.78 |
| CDY53616 | Canola | plastid | 60.8 | 22.49 |
| Os05t0500400-01 | Rice | plastid | 54.4 | 20.0 |
| EES19766 | Sorghum | plastid | 53.6 | 18.98 |
| TraesCS1B01G331700.1 | Wheat | plastid | 50.4 | 18.48 |
| Zm00001d038606_P001 | Maize | plastid | 50.4 | 18.31 |
| TraesCS1A01G319400.1 | Wheat | plastid | 49.6 | 18.13 |
| TraesCS1D01G319200.1 | Wheat | plastid | 49.6 | 18.13 |
| HORVU1Hr1G066510.7 | Barley | mitochondrion | 51.2 | 18.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400041419 | EnsemblPlantsGene:PGSC0003DMG400016049 | InterPro:DUF1995 | PANTHER:PTHR36365 | PFAM:PF09353 | PGSC:PGSC0003DMG400016049 |
| UniParc:UPI0002953ED3 | UniProt:M1BBC8 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016049]
Coordinates
chr00:+:32094997..32095818
Molecular Weight (calculated)
14050.9 Da
IEP (calculated)
4.487
GRAVY (calculated)
0.047
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPEASRLTV MKEISDTLYP KPVVIFNPTW GFDEESSFGE MSGFVGSFEV VYSFMGLEVR GILSNRKGVM FKCVKDGVLS GEKWYVFVEE DGELKVVSRF
101: KTGPSIVEVE NVLYNLMAVH EFTNS
101: KTGPSIVEVE NVLYNLMAVH EFTNS
001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK
Arabidopsis Description
AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.