CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89402
CDX89404
CDX94426
CDX94429
CDY49480
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	CDX89402	AT4G25680.1	21798944
AT3G20680.1	CDX89404	AT4G25680.1	21798944
AT3G20680.1	CDX94426	AT4G25680.1	21798944
AT3G20680.1	CDX94429	AT4G25680.1	21798944
AT3G20680.1	CDY49480	AT4G25680.1	21798944
AT3G20680.1	CDY66007	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023936.1-P	Field mustard	plastid	97.93	97.93
CDY43066	Canola	plastid	93.49	95.18
AT3G20680.1	Thale cress	plastid	81.66	81.66
PGSC0003DMT400041419	Potato	cytosol	22.49	60.8
VIT_19s0014g05110.t01	Wine grape	plastid	56.21	56.05
KRH22230	Soybean	plastid	54.73	54.57
Solyc12g005240.1.1	Tomato	plastid	50.59	53.27
KRH27109	Soybean	plastid	54.44	53.18
PGSC0003DMT400056133	Potato	plastid	49.41	51.38
GSMUA_Achr6P00560_001	Banana	plastid	48.22	48.08
EES19766	Sorghum	plastid	42.9	41.08
Os05t0500400-01	Rice	plastid	40.83	40.59
TraesCS1B01G331700.1	Wheat	plastid	40.83	40.47
TraesCS1A01G319400.1	Wheat	plastid	40.53	40.06
TraesCS1D01G319200.1	Wheat	plastid	40.24	39.77
HORVU1Hr1G066510.7	Barley	mitochondrion	41.42	39.55
Zm00001d038606_P001	Maize	plastid	39.65	38.95

Protein Annotations

EnsemblPlants:CDY53616	EnsemblPlantsGene:GSBRNA2T00011082001	InterPro:DUF1995	PANTHER:PTHR36365	PFAM:PF09353	ProteinID:CDY53616
ProteinID:CDY53616.1	SEG:seg	UniParc:UPI0004EE2AF8	UniProt:A0A078IUT7	MapMan:35.2	:

Description

BnaA01g25590DBnaA01g25590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUT7]

Coordinates

chrLK033220:+:58416..59714

Molecular Weight (calculated)

37597.3 Da

IEP (calculated)

10.089

GRAVY (calculated)

-0.245

Length

338 amino acids

Sequence
(BLAST)

001: MASSTLFKFH SQTFKTLNPS PPSSNHPTSR ISHLHFPTSL SRHSPRLNKE STTRTRFLAP LCSSLPSPSS PPASKEEAIL QAKTCLSSCL LKPLNNPKLA
101: SPKLKKLKQP RFRLEIPILD DDSPSSLSQL AFSIFSDMPI SRRGSNSVKL LFLWPDPSFI EPAVKAFRSD NTNHIAMSPV SEPLNRALKS ADVAVFMAPE
201: RSQLEDVRVS TEAFATKPVV MINPRWLFEE EKSFGDDFVG SFDVIYAFTG LEVRGILSKR KGVIFKCVRD GVVSGERWNV LVEEEEGDGA LRVVSQFKAR
301: PSMEEVELVL YNLMAMNSPI TKSAKFLKDL VSNITGKK

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.