Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010452.1-P | Field mustard | cytosol | 98.02 | 97.64 |
| CDY66007 | Canola | cytosol | 98.02 | 97.64 |
| CDX89402 | Canola | cytosol | 86.56 | 87.25 |
| CDX94426 | Canola | cytosol | 86.17 | 86.51 |
| AT4G25680.1 | Thale cress | cytosol | 85.77 | 86.11 |
| AT4G25660.1 | Thale cress | cytosol | 83.4 | 82.75 |
| CDX94429 | Canola | cytosol | 77.87 | 80.41 |
| CDX89404 | Canola | cytosol | 77.87 | 80.41 |
| KRH08874 | Soybean | cytosol | 67.59 | 69.8 |
| KRH38387 | Soybean | cytosol | 66.8 | 68.15 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 64.82 | 67.49 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.52 | 57.66 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 50.2 | 52.92 |
| Zm00001d045580_P001 | Maize | cytosol | 52.96 | 50.0 |
| EER87703 | Sorghum | cytosol | 52.57 | 49.63 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 51.38 | 48.15 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 36.76 | 47.21 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 52.96 | 45.58 |
| TraesCSU01G065800.1 | Wheat | cytosol | 52.17 | 44.59 |
| PGSC0003DMT400018924 | Potato | cytosol | 37.15 | 44.34 |
| Solyc02g082060.1.1 | Tomato | cytosol | 35.57 | 42.25 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 52.57 | 40.92 |
| CDY65538 | Canola | cytosol, mitochondrion | 25.3 | 29.09 |
| CDY65539 | Canola | cytosol, mitochondrion | 25.3 | 29.09 |
| CDX88162 | Canola | cytosol, mitochondrion | 25.3 | 29.09 |
| CDY05376 | Canola | cytosol, mitochondrion | 24.51 | 28.7 |
| CDY07077 | Canola | cytosol, mitochondrion | 24.9 | 28.64 |
| CDY05475 | Canola | mitochondrion | 24.11 | 28.24 |
| CDY39951 | Canola | cytosol | 24.9 | 27.63 |
| CDX87334 | Canola | cytosol | 24.51 | 26.72 |
| CDX67961 | Canola | cytosol | 23.32 | 25.88 |
| CDX79359 | Canola | cytosol | 22.92 | 25.44 |
| CDX76766 | Canola | nucleus | 22.92 | 24.58 |
| CDX75209 | Canola | nucleus | 22.13 | 24.35 |
| CDY62507 | Canola | nucleus, plasma membrane | 22.92 | 24.07 |
| CDY35370 | Canola | nucleus, plasma membrane | 23.32 | 23.98 |
| CDX90471 | Canola | cytosol | 20.16 | 23.83 |
| CDY09624 | Canola | cytosol | 20.16 | 23.72 |
| CDY27921 | Canola | cytosol | 20.16 | 22.97 |
| CDX76571 | Canola | cytosol | 20.16 | 22.57 |
| CDX77757 | Canola | cytosol | 21.34 | 22.22 |
| CDY64684 | Canola | cytosol | 21.34 | 22.22 |
| CDY10616 | Canola | cytosol, nucleus, peroxisome | 20.95 | 21.12 |
| CDY25677 | Canola | nucleus | 20.95 | 19.7 |
| CDY17812 | Canola | nucleus | 21.74 | 19.57 |
| CDY17002 | Canola | nucleus | 21.74 | 19.57 |
| CDX68806 | Canola | nucleus | 23.72 | 19.35 |
| CDY23657 | Canola | nucleus | 20.95 | 18.93 |
| CDY56277 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole | 24.11 | 11.13 |
Protein Annotations
| EnsemblPlants:CDY49480 | EnsemblPlantsGene:GSBRNA2T00093136001 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | PFAM:PF05903 | ProteinID:CDY49480 |
| ProteinID:CDY49480.1 | SMART:SM01179 | UniParc:UPI0004EDEBF3 | UniProt:A0A078IF09 | MapMan:19.4.1.7 | : |
Description
BnaCnng17460DBnaCnng17460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF09]
Coordinates
chrLK032835:-:99036..100532
Molecular Weight (calculated)
27959.0 Da
IEP (calculated)
8.138
GRAVY (calculated)
-0.461
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEVVVHIYD VTNSGSEKTN NTILQINRFF KDGIGLGGIF HSAIQVYGDD EWSFGYCEQA TGVFSCPSTK NPMYTYREKI LLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK LPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNITSN VTNGSPQRPG TLSSSENGNL
201: RLQGSWFKGL LNTAKPSTST EMESKDGDAN HGAPNHQRKQ SRDSVPIHPT AFG
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK LPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNITSN VTNGSPQRPG TLSSSENGNL
201: RLQGSWFKGL LNTAKPSTST EMESKDGDAN HGAPNHQRKQ SRDSVPIHPT AFG
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.