CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24170
CDY36943
CDY63061
CDY63062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25170.1	CDY24170	AT3G47620.1	21798944
AT5G25170.1	CDY36943	AT3G47620.1	21798944
AT5G25170.1	CDY63061	AT4G00150.1	21798944
AT5G25170.1	CDY63062	AT4G00150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009823.1-P	Field mustard	cytosol, mitochondrion	99.55	99.55
CDY65539	Canola	cytosol, mitochondrion	98.64	98.64
CDY65538	Canola	cytosol, mitochondrion	98.64	98.64
CDX88162	Canola	cytosol, mitochondrion	98.64	98.64
AT5G25170.1	Thale cress	cytosol, mitochondrion	93.18	94.04
CDY05475	Canola	mitochondrion	89.55	91.2
CDY05376	Canola	cytosol, mitochondrion	89.09	90.74
VIT_04s0008g05960.t01	Wine grape	mitochondrion	72.73	70.8
KRH05264	Soybean	cytosol, mitochondrion	67.73	68.98
KRH15787	Soybean	mitochondrion	66.36	67.91
KRH61696	Soybean	cytosol	63.18	64.06
KRH52364	Soybean	mitochondrion	65.0	63.84
CDX79359	Canola	cytosol	59.55	57.46
CDX67961	Canola	cytosol	59.55	57.46
CDY39951	Canola	cytosol	59.55	57.46
CDX87334	Canola	cytosol	59.09	56.03
CDX75209	Canola	nucleus	57.27	54.78
CDY35370	Canola	nucleus, plasma membrane	60.91	54.47
CDY62507	Canola	nucleus, plasma membrane	59.55	54.36
CDX76766	Canola	nucleus	57.73	53.81
CDX90471	Canola	cytosol	43.64	44.86
CDY09624	Canola	cytosol	43.18	44.19
CDX68806	Canola	nucleus	60.45	42.9
CDY10616	Canola	cytosol, nucleus, peroxisome	47.73	41.83
CDY27921	Canola	cytosol	41.82	41.44
CDX76571	Canola	cytosol	42.27	41.15
CDY25677	Canola	nucleus	47.73	39.03
CDX77757	Canola	cytosol	42.73	38.68
CDY64684	Canola	cytosol	42.27	38.27
CDY17812	Canola	nucleus	48.18	37.72
CDY17002	Canola	nucleus	48.18	37.72
CDY23657	Canola	nucleus	47.73	37.5
CDY49480	Canola	cytosol	28.64	24.9
CDY66007	Canola	cytosol	28.18	24.41
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	59.09	23.72
CDX94429	Canola	cytosol	26.36	23.67
CDX89404	Canola	cytosol	26.36	23.67
CDX94426	Canola	cytosol	26.82	23.41
CDX89402	Canola	cytosol	25.45	22.31

Protein Annotations

EnsemblPlants:CDY07077	EnsemblPlantsGene:GSBRNA2T00123408001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	MEROPS:C97.A06	PANTHER:PTHR12378	PANTHER:PTHR12378:SF12	PFAM:PF05903
ProteinID:CDY07077	ProteinID:CDY07077.1	SEG:seg	SMART:SM01179	UniParc:UPI0004EE713D	MapMan:19.4.1.7

Description

BnaA04g22380D

Coordinates

chrLK031974:+:999572..1000847

Molecular Weight (calculated)

24690.7 Da

IEP (calculated)

9.740

GRAVY (calculated)

-0.451

Length

220 amino acids

Sequence
(BLAST)

001: MLCRMVVVAG RKKKAGSVPV YLNVYDLTPI NGYAYWLGLG VYHSGVEVHG VEYGFGAHEH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PEKVRAFMEK
101: LAEEYSGNTY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKV PEAEEKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGGGERRRQ CLPPSPPVTA

Best Arabidopsis Sequence Match ( AT5G25170.1 )
(BLAST)

001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV

Arabidopsis Description

At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.