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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 2
  • extracellular 1
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009823.1-P Field mustard cytosol, mitochondrion 94.5 93.64
CDY07077 Canola cytosol, mitochondrion 94.04 93.18
CDY65539 Canola cytosol, mitochondrion 93.58 92.73
CDY65538 Canola cytosol, mitochondrion 93.58 92.73
CDX88162 Canola cytosol, mitochondrion 93.58 92.73
CDY05475 Canola mitochondrion 89.45 90.28
Bra020487.1-P Field mustard mitochondrion 89.45 90.28
CDY05376 Canola cytosol, mitochondrion 88.99 89.81
VIT_04s0008g05960.t01 Wine grape mitochondrion 73.39 70.8
KRH05264 Soybean cytosol, mitochondrion 67.89 68.52
KRH15787 Soybean mitochondrion 67.43 68.37
KRH61696 Soybean cytosol 63.3 63.59
KRH52364 Soybean mitochondrion 65.14 63.39
AT2G25190.1 Thale cress nucleus, vacuole 64.22 58.33
AT1G80690.2 Thale cress cytosol 59.63 56.28
AT1G47740.3 Thale cress nucleus 51.83 40.5
AT4G17486.1 Thale cress cytosol 40.83 39.73
AT5G47310.1 Thale cress cytosol 41.74 37.14
AT4G25680.1 Thale cress cytosol 27.52 23.81
AT4G25660.1 Thale cress cytosol 27.52 23.53
Protein Annotations
MapMan:19.4.1.7Gene3D:3.90.1720.30EntrezGene:832588UniProt:A0A178ULA1ProteinID:AED93408.1EMBL:AK220916
EMBL:AK221053ArrayExpress:AT5G25170EnsemblPlantsGene:AT5G25170RefSeq:AT5G25170TAIR:AT5G25170RefSeq:AT5G25170-TAIR-G
EnsemblPlants:AT5G25170.1TAIR:AT5G25170.1Unigene:At.30925EMBL:BT010645MEROPS:C97.A06GO:GO:0003674
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0008150GO:GO:0016020RefSeq:NP_568467.1
ProteinID:OAO94320.1PFAM:PF05903PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281InterPro:PPPDE_domPANTHER:PTHR12378PANTHER:PTHR12378:SF12
UniProt:Q6NQ19SMART:SM01179UniParc:UPI0000162585SEG:seg::
Description
At5g25170 [Source:UniProtKB/TrEMBL;Acc:Q6NQ19]
Coordinates
chr5:+:8693012..8695095
Molecular Weight (calculated)
24691.8 Da
IEP (calculated)
9.870
GRAVY (calculated)
-0.440
Length
218 amino acids
Sequence
(BLAST)
001: MLCRMVVVTG RKKKPGSVPV YLNVYDLTPI NGYAYWLGLG IYHSGVEVHG VEYGFGAHDH STTGIFEVEP KQCPGFTFRK SILIGRTDLD PENVRVFMEK
101: LAEEYSGNSY HLITKNCNHF CNDVCVQLTR RSIPSWVNRL ARFGLFCNCV LPAELNETKV RQVRSKEEKI PEVEKKKLRS RSSRFPPGPS LSSSGSLNRS
201: RRGERRRQCL PPSPTVSV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.