Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024951.1-P | Field mustard | cytosol | 91.02 | 91.77 |
| CDY64684 | Canola | cytosol | 91.02 | 91.77 |
| CDX77757 | Canola | cytosol | 90.61 | 91.36 |
| AT4G17486.1 | Thale cress | cytosol | 69.39 | 75.89 |
| Solyc08g078220.2.1 | Tomato | cytosol | 63.27 | 70.14 |
| PGSC0003DMT400067477 | Potato | cytosol | 62.86 | 69.68 |
| KRH28159 | Soybean | cytosol | 61.63 | 67.41 |
| KRH77327 | Soybean | cytosol | 59.18 | 64.73 |
| KRH04183 | Soybean | cytosol | 57.55 | 63.23 |
| KRH57475 | Soybean | cytosol | 56.73 | 62.33 |
| GSMUA_Achr4P30040_001 | Banana | mitochondrion | 56.73 | 62.05 |
| Zm00001d026190_P001 | Maize | cytosol | 52.24 | 61.54 |
| EES11216 | Sorghum | cytosol | 52.24 | 61.54 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.47 | 60.93 |
| Zm00001d002758_P002 | Maize | cytosol | 51.43 | 60.29 |
| TraesCS6A01G243700.2 | Wheat | cytosol | 49.8 | 59.8 |
| TraesCS6B01G280600.1 | Wheat | cytosol | 49.39 | 59.02 |
| TraesCS6D01G225900.1 | Wheat | cytosol | 49.39 | 59.02 |
| EES07522 | Sorghum | cytosol | 48.57 | 56.94 |
| Zm00001d017468_P001 | Maize | cytosol | 48.57 | 56.94 |
| Os02t0655500-01 | Rice | cytosol | 46.94 | 56.37 |
| Os04t0548000-01 | Rice | cytosol | 46.94 | 55.56 |
| TraesCS2A01G416700.1 | Wheat | cytosol | 45.71 | 53.59 |
| TraesCS5A01G543200.2 | Wheat | cytosol, peroxisome, vacuole | 50.61 | 53.45 |
| TraesCS2B01G435700.2 | Wheat | cytosol | 45.31 | 53.37 |
| TraesCS2D01G413700.1 | Wheat | cytosol | 46.12 | 53.05 |
| TraesCS4B01G376300.2 | Wheat | vacuole | 51.02 | 52.74 |
| EER95706 | Sorghum | mitochondrion | 50.2 | 52.56 |
| Os03t0100900-01 | Rice | plastid | 52.24 | 52.24 |
| HORVU0Hr1G009550.1 | Barley | cytosol, peroxisome, plasma membrane | 51.02 | 52.08 |
| GSMUA_Achr1P00440_001 | Banana | mitochondrion | 53.47 | 47.81 |
| HORVU2Hr1G098080.1 | Barley | peroxisome | 45.71 | 42.91 |
| AT5G25170.1 | Thale cress | cytosol, mitochondrion | 37.14 | 41.74 |
| Zm00001d027266_P001 | Maize | mitochondrion, plastid | 50.2 | 41.41 |
| AT1G80690.2 | Thale cress | cytosol | 35.92 | 38.1 |
| AT2G25190.1 | Thale cress | nucleus, vacuole | 36.73 | 37.5 |
| AT1G47740.3 | Thale cress | nucleus | 40.41 | 35.48 |
| GSMUA_Achr5P12520_001 | Banana | plastid | 52.24 | 35.07 |
| AT4G25680.1 | Thale cress | cytosol | 22.45 | 21.83 |
| AT4G25660.1 | Thale cress | cytosol | 22.04 | 21.18 |
Protein Annotations
| MapMan:19.4.1.7 | Gene3D:3.90.1720.30 | EntrezGene:834778 | UniProt:A0A178UAX1 | ProteinID:AED95497.1 | EMBL:AK227459 |
| ArrayExpress:AT5G47310 | EnsemblPlantsGene:AT5G47310 | RefSeq:AT5G47310 | TAIR:AT5G47310 | RefSeq:AT5G47310-TAIR-G | EnsemblPlants:AT5G47310.1 |
| TAIR:AT5G47310.1 | ProteinID:BAA97165.1 | EMBL:BT005996 | MEROPS:C97.A03 | GO:GO:0008150 | RefSeq:NP_199542.1 |
| ProteinID:OAO90810.1 | PFAM:PF05903 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| InterPro:PPPDE_dom | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF35 | UniProt:Q9LVS8 | SMART:SM01179 | UniParc:UPI0000060DEF |
| SEG:seg | : | : | : | : | : |
Description
At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
Coordinates
chr5:+:19200731..19202972
Molecular Weight (calculated)
27413.8 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.423
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.