Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G25660.1 | Thale cress | cytosol | 93.65 | 92.55 |
| Bra010452.1-P | Field mustard | cytosol | 87.3 | 86.61 |
| CDY66007 | Canola | cytosol | 87.3 | 86.61 |
| CDX89402 | Canola | cytosol | 86.11 | 86.45 |
| Bra013910.1-P | Field mustard | cytosol | 85.71 | 86.06 |
| CDY49480 | Canola | cytosol | 86.11 | 85.77 |
| CDX94426 | Canola | cytosol | 85.71 | 85.71 |
| CDX89404 | Canola | cytosol | 82.54 | 84.9 |
| CDX94429 | Canola | cytosol | 82.54 | 84.9 |
| Bra013908.1-P | Field mustard | cytosol | 81.75 | 84.08 |
| KRH08874 | Soybean | cytosol | 69.44 | 71.43 |
| KRH38387 | Soybean | cytosol | 68.65 | 69.76 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 65.87 | 68.31 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.35 | 57.26 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 50.79 | 53.33 |
| Zm00001d045580_P001 | Maize | cytosol | 51.59 | 48.51 |
| EER87703 | Sorghum | cytosol | 51.59 | 48.51 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 50.79 | 47.41 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 36.51 | 46.7 |
| PGSC0003DMT400018924 | Potato | cytosol | 38.89 | 46.23 |
| Solyc02g082060.1.1 | Tomato | cytosol | 38.1 | 45.07 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 52.38 | 44.9 |
| TraesCSU01G065800.1 | Wheat | cytosol | 51.59 | 43.92 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 51.98 | 40.31 |
| AT5G25170.1 | Thale cress | cytosol, mitochondrion | 23.81 | 27.52 |
| AT1G80690.2 | Thale cress | cytosol | 24.6 | 26.84 |
| AT2G25190.1 | Thale cress | nucleus, vacuole | 23.41 | 24.58 |
| AT5G47310.1 | Thale cress | cytosol | 21.83 | 22.45 |
| AT4G17486.1 | Thale cress | cytosol | 19.84 | 22.32 |
| AT1G47740.3 | Thale cress | nucleus | 21.43 | 19.35 |
Protein Annotations
| MapMan:19.4.1.7 | Gene3D:3.90.1720.30 | EntrezGene:828673 | UniProt:A0A178V7Y9 | ProteinID:AEE85094.1 | EMBL:AK227649 |
| ArrayExpress:AT4G25680 | EnsemblPlantsGene:AT4G25680 | RefSeq:AT4G25680 | TAIR:AT4G25680 | RefSeq:AT4G25680-TAIR-G | EnsemblPlants:AT4G25680.1 |
| TAIR:AT4G25680.1 | EMBL:AY084962 | EMBL:BT003130 | ProteinID:CAB43699.1 | ProteinID:CAB81378.1 | GO:GO:0008150 |
| RefSeq:NP_194298.1 | ProteinID:OAP01103.1 | PFAM:PF05903 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | InterPro:PPPDE_dom |
| PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | UniProt:Q9SZZ6 | SMART:SM01179 | UniParc:UPI000000BF00 | SEG:seg |
Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
Coordinates
chr4:+:13087973..13090161
Molecular Weight (calculated)
27804.8 Da
IEP (calculated)
8.117
GRAVY (calculated)
-0.446
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.