Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- golgi 1
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08874 | Soybean | cytosol | 61.67 | 60.41 |
| KRH38387 | Soybean | cytosol | 61.25 | 59.27 |
| Zm00001d029725_P001 | Maize | extracellular, mitochondrion | 54.17 | 53.06 |
| GSMUA_Achr8P12230_001 | Banana | cytosol | 54.17 | 52.85 |
| GSMUA_Achr11P... | Banana | cytosol | 54.17 | 52.63 |
| HORVU1Hr1G049520.3 | Barley | cytosol, peroxisome, plastid | 52.5 | 51.85 |
| EER94588 | Sorghum | cytosol | 52.92 | 51.84 |
| TraesCS1B01G205700.1 | Wheat | cytosol, peroxisome, plastid | 52.08 | 51.65 |
| AT4G25680.1 | Thale cress | cytosol | 53.33 | 50.79 |
| CDX94426 | Canola | cytosol | 53.33 | 50.79 |
| CDX89402 | Canola | cytosol | 52.92 | 50.6 |
| Os10t0533900-01 | Rice | cytosol, nucleus, peroxisome | 51.67 | 50.41 |
| Bra013910.1-P | Field mustard | cytosol | 52.5 | 50.2 |
| CDY49480 | Canola | cytosol | 52.92 | 50.2 |
| CDY66007 | Canola | cytosol | 52.92 | 50.0 |
| Bra010452.1-P | Field mustard | cytosol | 52.92 | 50.0 |
| AT4G25660.1 | Thale cress | cytosol | 52.5 | 49.41 |
| CDX94429 | Canola | cytosol | 50.0 | 48.98 |
| CDX89404 | Canola | cytosol | 49.58 | 48.57 |
| Bra013908.1-P | Field mustard | cytosol | 49.58 | 48.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.5 | 45.97 |
| TraesCS1A01G184300.1 | Wheat | cytosol | 52.5 | 45.0 |
| TraesCS1D01G192400.1 | Wheat | cytosol, peroxisome, plastid | 52.08 | 44.48 |
| HORVU1Hr1G049510.1 | Barley | cytosol | 24.17 | 43.28 |
| GSMUA_Achr11P... | Banana | cytosol | 35.83 | 42.16 |
| Zm00001d045580_P001 | Maize | cytosol | 43.33 | 38.81 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 42.92 | 38.15 |
| EER87703 | Sorghum | cytosol | 42.5 | 38.06 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 30.83 | 37.56 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 42.92 | 35.03 |
| TraesCSU01G065800.1 | Wheat | cytosol | 42.92 | 34.8 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 42.92 | 31.69 |
| KRH15787 | Soybean | mitochondrion | 26.67 | 29.77 |
| KRH05264 | Soybean | cytosol, mitochondrion | 26.25 | 29.17 |
| KRH28159 | Soybean | cytosol | 27.08 | 29.02 |
| KRH61696 | Soybean | cytosol | 25.42 | 28.11 |
| KRH77327 | Soybean | cytosol | 25.83 | 27.68 |
| KRH44526 | Soybean | mitochondrion | 25.0 | 27.65 |
| KRH47381 | Soybean | cytosol | 24.58 | 26.94 |
| KRH52364 | Soybean | mitochondrion | 25.0 | 26.79 |
| KRH57475 | Soybean | cytosol | 24.58 | 26.46 |
| KRH04183 | Soybean | cytosol | 23.75 | 25.56 |
| KRH03735 | Soybean | nucleus | 23.75 | 25.33 |
| KRH63012 | Soybean | nucleus | 22.92 | 23.91 |
| KRG89196 | Soybean | mitochondrion | 25.0 | 23.9 |
| KRH49521 | Soybean | mitochondrion | 25.0 | 23.9 |
| KRH05795 | Soybean | mitochondrion | 24.58 | 23.51 |
| KRH15239 | Soybean | mitochondrion | 24.58 | 23.51 |
| KRH54877 | Soybean | cytosol, peroxisome | 18.33 | 23.28 |
| KRH38144 | Soybean | mitochondrion | 20.83 | 23.26 |
Protein Annotations
| EMBL:ACUP02006660 | EnsemblPlants:KRH35244 | EnsemblPlantsGene:GLYMA_10G231400 | EntrezGene:100796498 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom |
| PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | PFAM:PF05903 | ProteinID:KRH35244 | ProteinID:KRH35244.1 | SMART:SM01179 |
| TMHMM:TMhelix | UniParc:UPI000233C7C1 | UniProt:I1LDM4 | MapMan:19.4.1.7 | : | : |
Description
hypothetical protein
Coordinates
chr10:-:46106023..46108113
Molecular Weight (calculated)
27098.4 Da
IEP (calculated)
10.247
GRAVY (calculated)
-0.452
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKVMLHIYD VTNGSESKKR TIVGINNVLY GTIGLGGIFH SAVQVYGDDE WSFGFCEGGD TGVFRCPAGK NTMYKYRKSF VLGDTNFNFF QVIEMLTQLS
101: REWRGDSYDP LSKNCNHFCD EFCARLGVEK LPGWVNRFAN AGDVTRERVE NAALRFRKAK TNIVSASKVA YRFLFGGFTK NNVKTDLDSS PRKSNRGGGS
201: PRVQAVLLKS LISRTKPFRC LSSSWKRSEL EPQQQTRNKI
101: REWRGDSYDP LSKNCNHFCD EFCARLGVEK LPGWVNRFAN AGDVTRERVE NAALRFRKAK TNIVSASKVA YRFLFGGFTK NNVKTDLDSS PRKSNRGGGS
201: PRVQAVLLKS LISRTKPFRC LSSSWKRSEL EPQQQTRNKI
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.