Factsheet for Zm00001d029725_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94588	Sorghum	cytosol	93.47	93.47
HORVU1Hr1G049520.3	Barley	cytosol, peroxisome, plastid	89.39	90.12
TraesCS1B01G205700.1	Wheat	cytosol, peroxisome, plastid	88.98	90.08
Os10t0533900-01	Rice	cytosol, nucleus, peroxisome	85.71	85.37
TraesCS1A01G184300.1	Wheat	cytosol	88.57	77.5
TraesCS1D01G192400.1	Wheat	cytosol, peroxisome, plastid	85.71	74.73
GSMUA_Achr11P...	Banana	cytosol	73.88	73.28
GSMUA_Achr8P12230_001	Banana	cytosol	73.06	72.76
VIT_16s0050g01050.t01	Wine grape	cytosol	68.57	69.14
KRH08874	Soybean	cytosol	68.98	68.98
KRH38387	Soybean	cytosol	67.35	66.53
HORVU1Hr1G049510.1	Barley	cytosol	34.29	62.69
KRH35244	Soybean	cytosol, peroxisome, plastid	53.06	54.17
Zm00001d045580_P001	Maize	cytosol	54.69	50.0
PGSC0003DMT400018924	Potato	cytosol	40.0	46.23
Solyc02g082060.1.1	Tomato	cytosol	40.0	46.01
Zm00001d046249_P001	Maize	cytosol	22.04	25.59
Zm00001d026190_P001	Maize	cytosol	21.63	25.48
Zm00001d045118_P001	Maize	plastid	24.9	25.21
Zm00001d002758_P002	Maize	cytosol	21.22	24.88
Zm00001d017468_P001	Maize	cytosol	20.41	23.92
Zm00001d028130_P001	Maize	mitochondrion	23.27	22.8
Zm00001d048173_P001	Maize	mitochondrion	23.27	22.53
Zm00001d048567_P002	Maize	endoplasmic reticulum, plasma membrane	20.41	19.23
Zm00001d027266_P001	Maize	mitochondrion, plastid	22.45	18.52

Protein Annotations

EMBL:BT083890	EMBL:EU964270	EnsemblPlants:Zm00001d029725_P001	EnsemblPlants:Zm00001d029725_T001	EnsemblPlantsGene:Zm00001d029725	EntrezGene:100276728
Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF9	PFAM:PF05903	ProteinID:ONL99496.1
SMART:SM01179	UniParc:UPI000182D1B0	UniProt:B6TH05	MapMan:19.4.1.7	:	:

Description

csu3DeSI-like protein

Coordinates

chr1:+:84224821..84227369

Molecular Weight (calculated)

27001.6 Da

IEP (calculated)

7.466

GRAVY (calculated)

-0.443

Length

245 amino acids

Sequence
(BLAST)

001: MKEVVLHVYD VTNSDSEKTN NTILQINRIF KDRIGLGGIF HSAVQVYGED EWSFGFCESG SGVFSCPIGK NPMYTYRERI VLGETECGIA AVNRILRELS
101: REWPGHSYDL LSRNCNHFCD VLCERLGVPK LPGWVNRFAN AGDTAVVVAE NTAVKFRQAK TEIVNASRVA YRFMAGLTSK NQASPESPGN NQNRGSPSFQ
201: GAWFKNIVSA GAKPSSSGST RTHFQDADDG TPLQHQSSTE QSTQL

Best Arabidopsis Sequence Match ( AT4G25680.1 )
(BLAST)

001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ

Arabidopsis Description

At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.