Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G205700.1 | Wheat | cytosol, peroxisome, plastid | 80.43 | 93.39 |
| TraesCS1A01G184300.1 | Wheat | cytosol | 92.88 | 93.21 |
| HORVU1Hr1G049520.3 | Barley | cytosol, peroxisome, plastid | 80.07 | 92.59 |
| Zm00001d029725_P001 | Maize | extracellular, mitochondrion | 74.73 | 85.71 |
| EER94588 | Sorghum | cytosol | 74.38 | 85.31 |
| Os10t0533900-01 | Rice | cytosol, nucleus, peroxisome | 71.17 | 81.3 |
| HORVU1Hr1G049510.1 | Barley | cytosol | 33.81 | 70.9 |
| GSMUA_Achr8P12230_001 | Banana | cytosol | 61.57 | 70.33 |
| GSMUA_Achr11P... | Banana | cytosol | 61.57 | 70.04 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 57.65 | 66.67 |
| KRH08874 | Soybean | cytosol | 58.01 | 66.53 |
| KRH38387 | Soybean | cytosol | 56.58 | 64.11 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 44.48 | 52.08 |
| PGSC0003DMT400018924 | Potato | cytosol | 34.52 | 45.75 |
| Solyc02g082060.1.1 | Tomato | cytosol | 34.16 | 45.07 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 47.69 | 41.23 |
| TraesCS7D01G147600.1 | Wheat | plastid | 24.91 | 27.34 |
| TraesCS7D01G365100.1 | Wheat | cytosol | 19.22 | 26.21 |
| TraesCS6D01G225900.1 | Wheat | cytosol | 18.51 | 25.37 |
| TraesCS2D01G413700.1 | Wheat | cytosol | 18.51 | 24.41 |
| TraesCS4D01G261500.1 | Wheat | mitochondrion | 20.64 | 23.39 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G192400.1 | EnsemblPlantsGene:TraesCS1D01G192400 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 |
| PFAM:PF05903 | SEG:seg | SMART:SM01179 | MapMan:19.4.1.7 | : | : |
Description
No Description!
Coordinates
chr1D:+:268705015..268708456
Molecular Weight (calculated)
30851.5 Da
IEP (calculated)
6.973
GRAVY (calculated)
-0.304
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEVVLHVYD VTNSDSEKTN NTILQINRIF KDRIGLGGIF HSAVQVLPPT PPALPDPGDA FCLPACPLLL QIPNSHFPMC RVQVYGEEEW SFGFCENGSG
101: VFSCPVSKNP MYTYRERIVL GETECTIATV NRILRELSRD WPGHSYDLLS RNCNHFCDVL CDRLGVPKLP GWVNRFANAG DTAVVVAENT AVKFRQAKTE
201: IVNASRVAYR FMAGLTSKNQ ASQESPGEQN RGSPTFQGTW FKNVVSAGAK PSTSGSTPSQ EDDDTPPLAA PTINRATNKV V
101: VFSCPVSKNP MYTYRERIVL GETECTIATV NRILRELSRD WPGHSYDLLS RNCNHFCDVL CDRLGVPKLP GWVNRFANAG DTAVVVAENT AVKFRQAKTE
201: IVNASRVAYR FMAGLTSKNQ ASQESPGEQN RGSPTFQGTW FKNVVSAGAK PSTSGSTPSQ EDDDTPPLAA PTINRATNKV V
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Arabidopsis Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.