Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38387 | Soybean | cytosol | 96.33 | 95.16 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 78.78 | 79.42 |
| Solyc03g008010.2.1 | Tomato | cytosol | 73.88 | 76.37 |
| PGSC0003DMT400026255 | Potato | cytosol | 73.47 | 75.95 |
| GSMUA_Achr11P... | Banana | cytosol | 70.61 | 70.04 |
| AT4G25680.1 | Thale cress | cytosol | 71.43 | 69.44 |
| CDX94426 | Canola | cytosol | 71.43 | 69.44 |
| AT4G25660.1 | Thale cress | cytosol | 72.24 | 69.41 |
| GSMUA_Achr8P12230_001 | Banana | cytosol | 69.39 | 69.11 |
| Zm00001d029725_P001 | Maize | extracellular, mitochondrion | 68.98 | 68.98 |
| CDX89402 | Canola | cytosol | 70.61 | 68.92 |
| Solyc03g034310.1.1 | Tomato | cytosol | 24.08 | 68.6 |
| Bra013910.1-P | Field mustard | cytosol | 70.2 | 68.53 |
| CDY66007 | Canola | cytosol | 70.61 | 68.11 |
| Bra010452.1-P | Field mustard | cytosol | 70.61 | 68.11 |
| EER94588 | Sorghum | cytosol | 67.76 | 67.76 |
| CDY49480 | Canola | cytosol | 69.8 | 67.59 |
| HORVU1Hr1G049520.3 | Barley | cytosol, peroxisome, plastid | 66.94 | 67.49 |
| TraesCS1B01G205700.1 | Wheat | cytosol, peroxisome, plastid | 66.53 | 67.36 |
| Os10t0533900-01 | Rice | cytosol, nucleus, peroxisome | 66.53 | 66.26 |
| CDX94429 | Canola | cytosol | 65.71 | 65.71 |
| CDX89404 | Canola | cytosol | 65.31 | 65.31 |
| Bra013908.1-P | Field mustard | cytosol | 64.9 | 64.9 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 60.41 | 61.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 60.0 | 59.27 |
| TraesCS1A01G184300.1 | Wheat | cytosol | 66.94 | 58.57 |
| TraesCS1D01G192400.1 | Wheat | cytosol, peroxisome, plastid | 66.53 | 58.01 |
| HORVU1Hr1G049510.1 | Barley | cytosol | 29.39 | 53.73 |
| GSMUA_Achr11P... | Banana | cytosol | 42.04 | 50.49 |
| EER87703 | Sorghum | cytosol | 55.1 | 50.37 |
| Zm00001d045580_P001 | Maize | cytosol | 54.69 | 50.0 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 39.59 | 49.24 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 53.88 | 48.89 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 54.29 | 45.24 |
| TraesCSU01G065800.1 | Wheat | cytosol | 53.47 | 44.26 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 54.29 | 40.92 |
| KRH15787 | Soybean | mitochondrion | 27.35 | 31.16 |
| KRH05264 | Soybean | cytosol, mitochondrion | 26.94 | 30.56 |
| KRH61696 | Soybean | cytosol | 26.12 | 29.49 |
| KRH52364 | Soybean | mitochondrion | 26.12 | 28.57 |
| KRH44526 | Soybean | mitochondrion | 24.9 | 28.11 |
| KRH28159 | Soybean | cytosol | 25.31 | 27.68 |
| KRH47381 | Soybean | cytosol | 24.49 | 27.4 |
| KRH77327 | Soybean | cytosol | 24.49 | 26.79 |
| KRH57475 | Soybean | cytosol | 23.27 | 25.56 |
| KRH04183 | Soybean | cytosol | 22.45 | 24.66 |
| KRH03735 | Soybean | nucleus | 22.04 | 24.0 |
| KRH54877 | Soybean | cytosol, peroxisome | 17.96 | 23.28 |
| KRH63012 | Soybean | nucleus | 21.63 | 23.04 |
| KRH38144 | Soybean | mitochondrion | 19.18 | 21.86 |
| KRH15239 | Soybean | mitochondrion | 22.04 | 21.51 |
| KRH05795 | Soybean | mitochondrion | 22.04 | 21.51 |
| KRH49521 | Soybean | mitochondrion | 22.04 | 21.51 |
| KRG89196 | Soybean | mitochondrion | 22.04 | 21.51 |
Protein Annotations
| EMBL:ACUP02010213 | EnsemblPlants:KRH08874 | EnsemblPlantsGene:GLYMA_16G179500 | EntrezGene:100786944 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom |
| PANTHER:PTHR12378 | PANTHER:PTHR12378:SF9 | PFAM:PF05903 | ProteinID:KRH08874 | ProteinID:KRH08874.1 | SEG:seg |
| SMART:SM01179 | UniParc:UPI000233AC07 | UniProt:I1MPJ0 | MapMan:19.4.1.7 | : | : |
Description
hypothetical protein
Coordinates
chr16:-:34001579..34005088
Molecular Weight (calculated)
26845.6 Da
IEP (calculated)
7.808
GRAVY (calculated)
-0.402
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDVVLHIYD VTNSGSEKTN NTIVQINKIF KDGIGLGGIF HSAVQVFGDD EWSFGFCEQG TGVFSCPSGK NPMYTYRESI VLGKTNCSIF KVNQILRELS
101: REWPGSSYDL LSKNCNHFCD EFCERLGVPK LPGWVNRFAN AGDTAMEVAG NTALRFRQAK TEIVSASKVA YRFLLGVTNN VTNNVKNGPE SPDNSNRGGS
201: PRLQASWLKN IVTNGAKPST SSEAENQNGV MPLPPTRDDK ALLHS
101: REWPGSSYDL LSKNCNHFCD EFCERLGVPK LPGWVNRFAN AGDTAMEVAG NTALRFRQAK TEIVSASKVA YRFLLGVTNN VTNNVKNGPE SPDNSNRGGS
201: PRLQASWLKN IVTNGAKPST SSEAENQNGV MPLPPTRDDK ALLHS
001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ
Arabidopsis Description
At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.