Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G065800.1 | Wheat | cytosol | 94.56 | 93.92 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 97.96 | 88.62 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 67.35 | 73.33 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 48.98 | 73.1 |
| Zm00001d045580_P001 | Maize | cytosol | 64.29 | 70.52 |
| EER87703 | Sorghum | cytosol | 63.27 | 69.4 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 46.94 | 56.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.6 | 55.24 |
| CDX94426 | Canola | cytosol | 47.28 | 55.16 |
| CDX89404 | Canola | cytosol | 45.92 | 55.1 |
| CDX94429 | Canola | cytosol | 45.92 | 55.1 |
| Bra013908.1-P | Field mustard | cytosol | 45.92 | 55.1 |
| CDX89402 | Canola | cytosol | 46.94 | 54.98 |
| Bra013910.1-P | Field mustard | cytosol | 46.94 | 54.98 |
| KRH08874 | Soybean | cytosol | 45.24 | 54.29 |
| CDY66007 | Canola | cytosol | 46.6 | 53.94 |
| Bra010452.1-P | Field mustard | cytosol | 46.6 | 53.94 |
| KRH38387 | Soybean | cytosol | 45.24 | 53.63 |
| CDY49480 | Canola | cytosol | 45.58 | 52.96 |
| AT4G25680.1 | Thale cress | cytosol | 44.9 | 52.38 |
| AT4G25660.1 | Thale cress | cytosol | 44.22 | 50.98 |
| TraesCS1A01G184300.1 | Wheat | cytosol | 45.58 | 47.86 |
| PGSC0003DMT400018924 | Potato | cytosol | 32.65 | 45.28 |
| Solyc02g082060.1.1 | Tomato | cytosol | 31.97 | 44.13 |
| KRH35244 | Soybean | cytosol, peroxisome, plastid | 35.03 | 42.92 |
| TraesCS7A01G357600.1 | Wheat | cytosol | 19.39 | 27.67 |
| TraesCS4A01G040500.1 | Wheat | mitochondrion | 22.45 | 26.61 |
| TraesCS2A01G416700.1 | Wheat | cytosol | 18.37 | 25.84 |
| TraesCS6A01G243700.2 | Wheat | cytosol | 17.35 | 25.0 |
| TraesCS7A01G146100.1 | Wheat | plastid | 20.41 | 23.62 |
| TraesCS5A01G543200.2 | Wheat | cytosol, peroxisome, vacuole | 18.37 | 23.28 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G019000.1 | EnsemblPlantsGene:TraesCS7A01G019000 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | ncoils:Coil | PANTHER:PTHR12378 |
| PANTHER:PTHR12378:SF18 | PFAM:PF05903 | SEG:seg | SMART:SM01179 | MapMan:19.4.1.7 | : |
Description
No Description!
Coordinates
chr7A:-:7912703..7915481
Molecular Weight (calculated)
31500.2 Da
IEP (calculated)
4.710
GRAVY (calculated)
-0.652
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLQLQRSAV VSGKEPEPET GQEQEVVAHV YDVACSGPDG AGGGGATVLQ INRIFKDGIG LGGIFHTAIQ VYGNEEWSFG YCENGSGVFS CPPAKNPMYT
101: FRESIVLGKT SCSPRTVNQI ARELSREWPG ASYELLSRNC NHFCNEFCDK LGVPKLPGWV NRFANAGDAA LEAAETTAEK LKQAKKEIFT ACKAASTYLT
201: GSPSSTPSDA DDTAGSASNT LFEGAWIRSI IGISMKPSKS LMNDASSSSD DETSDDKSET DGKQPGRDQN EGEKDARQED QGTKSENKPP NHHS
101: FRESIVLGKT SCSPRTVNQI ARELSREWPG ASYELLSRNC NHFCNEFCDK LGVPKLPGWV NRFANAGDAA LEAAETTAEK LKQAKKEIFT ACKAASTYLT
201: GSPSSTPSDA DDTAGSASNT LFEGAWIRSI IGISMKPSKS LMNDASSSSD DETSDDKSET DGKQPGRDQN EGEKDARQED QGTKSENKPP NHHS
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Arabidopsis Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.