Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G171800.1 | Wheat | plastid | 97.79 | 97.43 |
| TraesCS7B01G076600.1 | Wheat | plastid | 93.73 | 94.42 |
| Os06t0213200-01 | Rice | cytosol, mitochondrion | 19.56 | 91.38 |
| EER89408 | Sorghum | plastid | 82.66 | 79.15 |
| Zm00001d044931_P001 | Maize | plastid | 81.55 | 78.93 |
| HORVU7Hr1G035680.1 | Barley | cytosol | 70.48 | 68.7 |
| GSMUA_Achr6P30510_001 | Banana | plastid | 67.9 | 62.8 |
| GSMUA_Achr9P27070_001 | Banana | plastid | 30.63 | 61.03 |
| KRG99384 | Soybean | plastid | 34.69 | 60.26 |
| KRH61282 | Soybean | nucleus | 54.61 | 57.36 |
| KRH51981 | Soybean | plastid | 54.98 | 57.31 |
| VIT_18s0001g10590.t01 | Wine grape | plastid | 55.72 | 54.51 |
| Bra011434.1-P | Field mustard | plastid | 53.51 | 54.51 |
| CDX75346 | Canola | plastid | 53.87 | 54.48 |
| AT4G33350.1 | Thale cress | plastid | 51.66 | 52.24 |
| PGSC0003DMT400020682 | Potato | plastid | 55.72 | 51.54 |
| Solyc04g079000.2.1 | Tomato | plastid | 55.72 | 51.54 |
| CDX68969 | Canola | plastid | 52.03 | 42.73 |
| TraesCS3D01G290500.1 | Wheat | plastid | 36.53 | 34.62 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G172300.1 | EnsemblPlantsGene:TraesCS7D01G172300 | Gene3D:3.40.1350.100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009941 |
| GO:GO:0015031 | InterPro:Tic22-like | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF2 | PFAM:PF04278 | SEG:seg |
| MapMan:23.1.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:124518634..124522254
Molecular Weight (calculated)
29072.2 Da
IEP (calculated)
9.669
GRAVY (calculated)
-0.142
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPNSSLPL AAAPMSDPSP YPSPPPNPLA AASSFLHHHL SSLASRFAAP RPALAAARPP GPHGAAAQPL ALGPDEVARA LTGTPVFTVC NSSNEFVLVS
101: DPATGLRSLG LLCFRSEDAD ALLSHVRTRQ PVLGKGAKVV PITLDQVYML KAEGIAFRFL PDPLQIKNAL QLKSGLTGFD GVPVFQSDLL VVKKQKKRYC
201: PVYFQKEDIE RELRKASKSS KGSALSKQIM VGSLEDVLKK MEINDRNSGW DDLIFIPPGK SLNQHINEVS A
101: DPATGLRSLG LLCFRSEDAD ALLSHVRTRQ PVLGKGAKVV PITLDQVYML KAEGIAFRFL PDPLQIKNAL QLKSGLTGFD GVPVFQSDLL VVKKQKKRYC
201: PVYFQKEDIE RELRKASKSS KGSALSKQIM VGSLEDVLKK MEINDRNSGW DDLIFIPPGK SLNQHINEVS A
001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
Arabidopsis Description
TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.