Factsheet for Bra011434.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001929.1-P
Bra003393.1-P
Bra007481.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra028351.1-P
Bra028357.1-P
Bra032216.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	Bra014069.1-P	AT1G47260.1	21798944
AT4G33350.1	Bra032216.1-P	AT1G47260.1	21798944
AT4G33350.1	Bra001929.1-P	AT3G24140.1	21798944
AT4G33350.1	Bra028351.1-P	AT3G24140.1	21798944
AT4G33350.1	Bra028357.1-P	AT3G24140.1	21798944
AT4G33350.1	Bra003393.1-P	AT3G59840.1	21798944
AT4G33350.1	Bra007481.1-P	AT3G59840.1	21798944
AT4G33350.1	Bra010452.1-P	AT4G25660.1	21798944
AT4G33350.1	Bra013908.1-P	AT4G25660.1	21798944
AT4G33350.1	Bra013910.1-P	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75346	Canola	plastid	94.36	93.66
AT4G33350.1	Thale cress	plastid	79.7	79.1
CDX68969	Canola	plastid	88.35	71.21
KRG99384	Soybean	plastid	39.1	66.67
KRH51981	Soybean	plastid	62.78	64.23
KRH61282	Soybean	nucleus	61.65	63.57
VIT_18s0001g10590.t01	Wine grape	plastid	65.04	62.45
Solyc04g079000.2.1	Tomato	plastid	61.65	55.97
PGSC0003DMT400020682	Potato	plastid	60.9	55.29
Os06t0213200-01	Rice	cytosol, mitochondrion	12.03	55.17
TraesCS7B01G076600.1	Wheat	plastid	54.51	53.9
TraesCS7D01G172300.1	Wheat	plastid	54.51	53.51
TraesCS7A01G171800.1	Wheat	plastid	54.51	53.31
GSMUA_Achr6P30510_001	Banana	plastid	58.27	52.9
EER89408	Sorghum	plastid	53.38	50.18
GSMUA_Achr9P27070_001	Banana	plastid	25.56	50.0
Zm00001d044931_P001	Maize	plastid	51.88	49.29
HORVU7Hr1G035680.1	Barley	cytosol	48.12	46.04
Bra028338.1-P	Field mustard	plastid	31.2	27.04

Protein Annotations

EnsemblPlants:Bra011434.1	EnsemblPlants:Bra011434.1-P	EnsemblPlantsGene:Bra011434	Gene3D:3.40.1350.100	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	GO:GO:0015031	InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	PFAM:PF04278
UniParc:UPI0002545CB9	UniProt:M4D4N0	MapMan:23.1.3.6	:	:	:

Description

AT4G33350 (E=3e-124) | chloroplast inner membrane import protein Tic22, putative

Coordinates

chrA01:+:2181590..2183580

Molecular Weight (calculated)

30012.8 Da

IEP (calculated)

9.753

GRAVY (calculated)

-0.458

Length

266 amino acids

Sequence
(BLAST)

001: MESSSSVKPN PFLSFLHHHC TRFASDLSSR FEDTKRLAES LTNRRFSPSP FASVSQSPKP SSGASTTTLN PSHVAKALAG TSVFTVSNTN NEFVLISDPT
101: GDKSIGLLCF RQEDAEAFLA QARLRRRELK TNAKVVPINL DQVYLLKVEG ISFRFLPDPI QIKNALELKS SSSKNGFDGV PVFQSELLVV RKKNKRYCPI
201: YFSKEDIERE LSKYTRADQQ IMVGSLEDVL RKMERSEKNS GWEDMIFIPP GRSYAQHMQE VVKEIK

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.