Factsheet for PGSC0003DMT400020682

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400040761
PGSC0003DMT400062222

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	PGSC0003DMT400040761	AT3G24140.1	21798944
AT4G33350.1	PGSC0003DMT400062222	AT3G59840.1	21798944
AT4G33350.1	PGSC0003DMT400018924	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079000.2.1	Tomato	plastid	96.93	96.93
KRG99384	Soybean	plastid	39.25	73.72
VIT_18s0001g10590.t01	Wine grape	plastid	67.24	71.12
KRH51981	Soybean	plastid	61.43	69.23
KRH61282	Soybean	nucleus	60.41	68.6
Os06t0213200-01	Rice	cytosol, mitochondrion	12.97	65.52
AT4G33350.1	Thale cress	plastid	56.66	61.94
CDX75346	Canola	plastid	56.66	61.94
Bra011434.1-P	Field mustard	plastid	55.29	60.9
GSMUA_Achr6P30510_001	Banana	plastid	57.0	57.0
TraesCS7D01G172300.1	Wheat	plastid	51.54	55.72
TraesCS7B01G076600.1	Wheat	plastid	50.85	55.39
TraesCS7A01G171800.1	Wheat	plastid	50.85	54.78
GSMUA_Achr9P27070_001	Banana	plastid	24.91	53.68
Zm00001d044931_P001	Maize	plastid	50.51	52.86
EER89408	Sorghum	plastid	50.85	52.65
HORVU7Hr1G035680.1	Barley	cytosol	45.73	48.2
CDX68969	Canola	plastid	53.92	47.88
PGSC0003DMT400056320	Potato	plastid	29.35	32.33

Protein Annotations

EntrezGene:102599839	MapMan:23.1.3.6	Gene3D:3.40.1350.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0015031	UniProt:M1ADY4	PFAM:PF04278	EnsemblPlantsGene:PGSC0003DMG400008017	PGSC:PGSC0003DMG400008017	EnsemblPlants:PGSC0003DMT400020682
PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	InterPro:Tic22-like	UniParc:UPI000295869D	RefSeq:XP_006354891.1	RefSeq:XP_006354892.1
SEG:seg	:	:	:	:	:

Description

Protein translocase [Source:PGSC_GENE;Acc:PGSC0003DMG400008017]

Coordinates

chr4:-:68290805..68295986

Molecular Weight (calculated)

32355.9 Da

IEP (calculated)

9.705

GRAVY (calculated)

-0.268

Length

293 amino acids

Sequence
(BLAST)

001: MESKPSTGFG PSSSPLLSLS TFVHQHCSRL GAELTNRIDE AKRLSSKIAA DFIQQPLPAA IGRSCSLPLH SYHLSLPFAS VSQRQEKVAK NTGLSSDYVA
101: KTLTGTSVYT VSNSNNEFVL ISDPNSAKSI GLLCFRQEDA EAFLAQVRLR KGEVRGGAKV VPLTLDQVYM LKVEGIAFRF LPDPVQIKNA MELKASDVKT
201: GFDGVPVFQS DLLVVKKRNR RYCPIYFRKE DIEKELSSRA SRGSSVSQHI MVGTLEDVLK KMEISQRNSG WEDLIFIPPG KSHSQHIQDV TKA

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.