Factsheet for PGSC0003DMT400040761

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002155
PGSC0003DMT400012607
PGSC0003DMT400019294
PGSC0003DMT400025536
PGSC0003DMT400026937	nucleus
PGSC0003DMT400030843
PGSC0003DMT400045210	nucleus
PGSC0003DMT400058528
PGSC0003DMT400068084
PGSC0003DMT400078675	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	PGSC0003DMT400025536	AT1G19980.1	21798944
AT3G24140.1	PGSC0003DMT400058528	AT1G62990.1	21798944
AT3G24140.1	PGSC0003DMT400068084	AT1G73790.1	21798944
AT3G24140.1	PGSC0003DMT400002155	AT3G25710.1	21798944
AT3G24140.1	PGSC0003DMT400019294	AT3G25710.1	21798944
AT3G24140.1	PGSC0003DMT400030843	AT4G02770.1	21798944
AT3G24140.1	PGSC0003DMT400012607	AT5G45600.1	21798944
AT3G24140.1	PGSC0003DMT400045210	AT5G46690.1	17088607
AT3G24140.1	PGSC0003DMT400045210	AT5G46690.1	21798944
AT3G24140.1	PGSC0003DMT400026937	AT5G65640.1	17088607
AT3G24140.1	PGSC0003DMT400078675	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053660.1.1	Tomato	nucleus	93.85	95.56
GSMUA_Achr8P28400_001	Banana	nucleus	34.1	66.83
VIT_05s0029g00050.t01	Wine grape	nucleus	65.38	64.23
GSMUA_Achr2P06030_001	Banana	nucleus	50.77	62.07
PGSC0003DMT400076223	Potato	nucleus	44.36	60.7
Bra001929.1-P	Field mustard	nucleus	60.0	57.78
CDX92996	Canola	nucleus	60.0	57.78
CDX94841	Canola	nucleus	59.49	56.86
Bra028357.1-P	Field mustard	nucleus	57.69	56.25
AT3G24140.1	Thale cress	nucleus	58.97	55.56
CDX85167	Canola	nucleus	55.13	55.27
KRH75571	Soybean	nucleus	60.0	54.55
KRH71094	Soybean	nucleus	60.0	52.47
CDX77460	Canola	nucleus	47.69	52.25
Bra028351.1-P	Field mustard	nucleus	46.15	50.0
Os05t0586300-00	Rice	nucleus	49.23	49.61
CDY64587	Canola	nucleus	46.67	49.06
CDY18083	Canola	nucleus	47.69	48.44
Zm00001d009715_P001	Maize	nucleus	50.0	46.65
TraesCS1D01G289400.1	Wheat	nucleus	48.46	45.11
TraesCS1B01G300100.1	Wheat	nucleus	47.95	44.84
TraesCS1A01G290800.1	Wheat	nucleus	47.44	44.05
KXG22636	Sorghum	nucleus	51.28	43.76
HORVU1Hr1G071330.3	Barley	nucleus	47.44	42.43
PGSC0003DMT400045210	Potato	nucleus	27.44	32.42
PGSC0003DMT400005446	Potato	nucleus	28.46	32.17
PGSC0003DMT400041644	Potato	nucleus	18.72	30.8
PGSC0003DMT400045820	Potato	nucleus	23.33	30.74
PGSC0003DMT400023497	Potato	nucleus	27.69	30.42
PGSC0003DMT400073574	Potato	nucleus	25.38	29.38

Protein Annotations

EntrezGene:102586799	MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0010052	GO:GO:0010377	GO:GO:0010444	GO:GO:0016043	GO:GO:0019538
GO:GO:0030154	GO:GO:0045597	GO:GO:0045893	GO:GO:0046983	GO:GO:0051782	GO:GO:0061086
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BAD1	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400015760
PGSC:PGSC0003DMG400015760	EnsemblPlants:PGSC0003DMT400040761	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002948AB0	RefSeq:XP_006365482.1	InterPro:bHLH_dom	SEG:seg	:

Description

Transcription factor FAMA [Source:PGSC_GENE;Acc:PGSC0003DMG400015760]

Coordinates

chr5:+:49098850..49102347

Molecular Weight (calculated)

44072.0 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.659

Length

390 amino acids

Sequence
(BLAST)

001: MEKEENCQAN SLPTSFQMAI IGESSSNNTN NQMVDYMVNS QSIQQQHNQC SLGFLPSNPS LDKLSFADVM QFADFGPKLA LNQTKVLEQD VGIDDPVYFL
101: KFPVLNEKKN VHDNDNDDDD DREALMVSQK ESGGKEKGEN NNNIVEKNQE GKSNNKRKRP RIKTSEEVES QRMTHIAVER NRRKQMNEHL RVLRSLMPGS
201: YVQRGDQASI IGGAIEFVRE LEQLLQCLES QKRRRIYGDA TPTRPLGDSS TTPPPSMPIN QNPNTINPHH QSPILFPLPN EYNIEGEIQE EVAESKSCLA
301: DVEVKLLGFD AMIKILSRRR PGQLIKAIAA LEDMQLSILH TNITTIEQTV LYSFNVKISG ETRYTADDIA NSIQHIFSFI HAEIAPYDIN

Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.