Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g098720.2.1 | Tomato | nucleus | 91.99 | 94.51 |
| KRG96858 | Soybean | nucleus | 46.88 | 47.59 |
| VIT_14s0128g00110.t01 | Wine grape | nucleus | 45.1 | 47.06 |
| KRH68589 | Soybean | nucleus | 45.99 | 45.19 |
| KRG92821 | Soybean | nucleus | 43.92 | 45.12 |
| KRH33976 | Soybean | nucleus | 42.73 | 43.37 |
| PGSC0003DMT400041644 | Potato | nucleus | 29.67 | 42.19 |
| CDY65719 | Canola | nucleus | 35.91 | 40.2 |
| CDY41734 | Canola | nucleus | 35.61 | 39.87 |
| PGSC0003DMT400005446 | Potato | nucleus | 40.65 | 39.71 |
| Bra027958.1-P | Field mustard | nucleus | 33.53 | 38.7 |
| PGSC0003DMT400045820 | Potato | nucleus | 33.83 | 38.51 |
| PGSC0003DMT400045210 | Potato | nucleus | 37.39 | 38.18 |
| PGSC0003DMT400076223 | Potato | nucleus | 26.41 | 31.23 |
| PGSC0003DMT400040761 | Potato | nucleus | 29.38 | 25.38 |
| PGSC0003DMT400023497 | Potato | nucleus | 21.96 | 20.85 |
Protein Annotations
| EntrezGene:102586012 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1CS96 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400028578 | PGSC:PGSC0003DMG400028578 | EnsemblPlants:PGSC0003DMT400073574 | PFscan:PS50888 | PANTHER:PTHR11969 |
| PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002963902 | RefSeq:XP_006361869.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028578]
Coordinates
chr1:+:76372434..76374193
Molecular Weight (calculated)
38303.5 Da
IEP (calculated)
4.904
GRAVY (calculated)
-0.685
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAITQQQ QYLYALLGTT NWSIGSGSGS GSSSDYHNNE AFDEFLPNNQ NVTAPQEYEN YSNWNLPAPL LVDSQNEFNQ WGQNSSSVLD HNFTIVDQQE
101: QQAQLDSPIE MSSSTTRPRR RRTRTKKNDE EIENQRITHI AVERNRRKQM NEYLSVLRTL MPESYVQRGD QASIVSGAIN YVKELEQQLQ FLSGQKHLTS
201: QNQEANGETS PFSEFFSIPQ YSTTMSAATT TSENVCCENE YYRNQQLPAT ADIEVTMVEN HANLKIRSKK RPRLLPTIIS GLESHRLSVL HLNVSKVDQF
301: VLCSLSLKVE EDCKMNSVED IAAVVNQILS RIHEEAN
101: QQAQLDSPIE MSSSTTRPRR RRTRTKKNDE EIENQRITHI AVERNRRKQM NEYLSVLRTL MPESYVQRGD QASIVSGAIN YVKELEQQLQ FLSGQKHLTS
201: QNQEANGETS PFSEFFSIPQ YSTTMSAATT TSENVCCENE YYRNQQLPAT ADIEVTMVEN HANLKIRSKK RPRLLPTIIS GLESHRLSVL HLNVSKVDQF
301: VLCSLSLKVE EDCKMNSVED IAAVVNQILS RIHEEAN
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.