Factsheet for VIT_14s0128g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96858	Soybean	nucleus	62.23	60.54
KRG92821	Soybean	nucleus	59.44	58.54
KRH33976	Soybean	nucleus	58.2	56.63
KRH68589	Soybean	nucleus	60.06	56.56
VIT_18s0001g06650.t01	Wine grape	nucleus	51.7	53.87
VIT_07s0191g00240.t01	Wine grape	nucleus	51.39	51.55
Solyc01g098720.2.1	Tomato	nucleus	47.06	46.34
PGSC0003DMT400073574	Potato	nucleus	47.06	45.1
CDY65719	Canola	nucleus	41.18	44.19
CDY41734	Canola	nucleus	40.87	43.85
VIT_02s0012g01450.t01	Wine grape	nucleus	42.11	43.17
Bra027958.1-P	Field mustard	nucleus	36.84	40.75
VIT_05s0020g02700.t01	Wine grape	nucleus	21.98	37.37
VIT_15s0048g02510.t01	Wine grape	nucleus	35.91	32.13
VIT_05s0029g00050.t01	Wine grape	nucleus	34.06	27.71
VIT_16s0050g02500.t01	Wine grape	nucleus	28.79	27.51

Protein Annotations

EntrezGene:100261443	wikigene:100261443	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AM485863	ProteinID:CAN66481
ProteinID:CAN66481.1	ProteinID:CBI36741	ProteinID:CBI36741.3	UniProt:D7U1X5	EMBL:FN596501	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EntrezGene:LOC100261443	wikigene:LOC100261443	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015C9D06	ArrayExpress:VIT_14s0128g00110	EnsemblPlantsGene:VIT_14s0128g00110	EnsemblPlants:VIT_14s0128g00110.t01
RefSeq:XP_002281083	RefSeq:XP_002281083.2	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:2775388..2776828

Molecular Weight (calculated)

36457.8 Da

IEP (calculated)

5.811

GRAVY (calculated)

-0.592

Length

323 amino acids

Sequence
(BLAST)

001: MALEAVVFQQ DLFGYNGKDL YSLFGGNWSC EFGLEKEDEK SCCFDTLESQ TETSHHYENW NSPSQPPPPS IVPHLNEWHH HNSSPEGLIP KQVPEFDSTL
101: PTATSSSSRP KRRRSKSKKN QEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPESYVQR GDQASIIGGA INFVKELEQR LQWLGGQKEK ENGEAGSSAP
201: FSEFFTFPQY STSSTVSDNS VSMADTVGGN QAVIADIEVT MVESHANLKI RSRRRPKQLL RMVSGLQSLH LTILHLNVTT IDQTVLYSLS VKVEDDCKLT
301: SVDDIATAVY QMLGRIQEEA MIN

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.