CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96858	Soybean	nucleus	89.5	92.47
KRH33976	Soybean	nucleus	68.22	70.48
KRG92821	Soybean	nucleus	66.47	69.51
VIT_14s0128g00110.t01	Wine grape	nucleus	56.56	60.06
KRH62289	Soybean	nucleus	47.81	50.62
KRH16792	Soybean	nucleus	47.23	50.0
KRH53000	Soybean	nucleus	48.1	49.4
KRH72411	Soybean	nucleus	48.1	47.69
Solyc01g098720.2.1	Tomato	nucleus	44.02	46.04
PGSC0003DMT400073574	Potato	nucleus	45.19	45.99
KRH75598	Soybean	nucleus	38.19	43.23
KRH45428	Soybean	nucleus	37.61	42.57
CDY65719	Canola	nucleus	36.73	41.86
CDY41734	Canola	nucleus	36.44	41.53
KRH11385	Soybean	cytosol	22.74	40.84
KRH20902	Soybean	cytosol	22.45	40.31
Bra027958.1-P	Field mustard	nucleus	33.82	39.73
KRH47774	Soybean	nucleus	37.03	33.07
KRH06347	Soybean	nucleus	36.73	31.66
KRH16521	Soybean	nucleus	27.7	28.7
KRH18131	Soybean	nucleus	27.41	27.98
KRH75571	Soybean	nucleus	33.24	26.57
KRH64504	Soybean	nucleus	25.95	25.87
KRH53438	Soybean	nucleus	26.24	25.79
KRH71094	Soybean	nucleus	32.65	25.11

Protein Annotations

EntrezGene:100777413	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02002121	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G240000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1JRF0
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH68589	ProteinID:KRH68589	ProteinID:KRH68589.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023C22F2
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:43873932..43876746

Molecular Weight (calculated)

38468.6 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.572

Length

343 amino acids

Sequence
(BLAST)

001: MQLGIFRGTH IKIFCMCLPE GERGMALEAV VYPQPQDPFG HGIKDPSYNY NNLLEGGGGN WGYADFNLEK EDRTCVPFLA NQTENYPYGE WNCSPSPPSM
101: LPQLNIASNP QSSETSNTQN NLDSSVSTPA RPKRRRTKSR KNKEEIENQR MTHIAVERNR RKQMNEYLSV LRSLMPESYV QRGDQASIIG GAINFVKELE
201: QRLQFLGAQK EKEAKSDVLF SEFFSFPQYS TSASGGCDNS TAMSEQKSEA QSGIADIEVT MVESHANLKI RSKKRPKQLL KIVSSLHGMR LTILHLNVTT
301: TGEIVLYSLS VKVEEDCKLG SVDEIAAAVY QILDRIQQET ISN

Best Arabidopsis Sequence Match ( AT1G72210.2 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV HFFLSFSPFF
301: VFFFLTRLE

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.