Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53000 | Soybean | nucleus | 92.9 | 90.12 |
| KRH16792 | Soybean | nucleus | 71.91 | 71.91 |
| KRH72411 | Soybean | nucleus | 73.46 | 68.79 |
| Bra040856.1-P | Field mustard | nucleus | 41.98 | 62.67 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 57.41 | 60.0 |
| CDY37634 | Canola | nucleus | 41.67 | 59.21 |
| CDY41479 | Canola | nucleus | 47.53 | 53.85 |
| Solyc12g087850.1.1 | Tomato | nucleus | 26.85 | 53.7 |
| AT1G72210.1 | Thale cress | nucleus | 52.47 | 53.12 |
| CDY21365 | Canola | nucleus | 49.07 | 52.82 |
| CDX91680 | Canola | nucleus | 46.6 | 52.8 |
| CDY04811 | Canola | nucleus | 48.77 | 52.49 |
| Bra016377.1-P | Field mustard | nucleus | 47.84 | 51.32 |
| Bra012329.1-P | Field mustard | nucleus | 47.84 | 51.16 |
| CDY12528 | Canola | nucleus | 44.44 | 51.06 |
| CDX68274 | Canola | nucleus | 50.93 | 50.93 |
| CDY50447 | Canola | nucleus | 50.93 | 50.93 |
| Bra003886.1-P | Field mustard | nucleus | 50.62 | 50.62 |
| KRG96858 | Soybean | nucleus | 51.23 | 50.0 |
| CDY46652 | Canola | nucleus | 43.52 | 50.0 |
| KRG92821 | Soybean | nucleus | 50.62 | 50.0 |
| Bra016080.1-P | Field mustard | nucleus | 50.0 | 49.85 |
| CDX96382 | Canola | nucleus | 50.0 | 49.85 |
| CDX72877 | Canola | nucleus | 49.69 | 49.09 |
| KRH33976 | Soybean | nucleus | 50.0 | 48.8 |
| PGSC0003DMT400045820 | Potato | nucleus | 44.44 | 48.65 |
| PGSC0003DMT400005446 | Potato | nucleus | 51.54 | 48.41 |
| Bra008017.1-P | Field mustard | nucleus | 48.46 | 48.16 |
| CDX82171 | Canola | nucleus | 48.46 | 48.16 |
| CDY03650 | Canola | nucleus | 48.15 | 47.85 |
| KRH68589 | Soybean | nucleus | 50.62 | 47.81 |
| Solyc04g074810.2.1 | Tomato | extracellular | 51.85 | 47.32 |
| KRH45428 | Soybean | nucleus | 41.36 | 44.22 |
| KRH75598 | Soybean | nucleus | 41.36 | 44.22 |
| AT1G22490.2 | Thale cress | nucleus | 44.44 | 44.17 |
| KRH11385 | Soybean | cytosol | 25.0 | 42.41 |
| KRH20902 | Soybean | cytosol | 24.69 | 41.88 |
| KRH47774 | Soybean | nucleus | 37.04 | 31.25 |
| KRH06347 | Soybean | nucleus | 37.65 | 30.65 |
| KRH64504 | Soybean | nucleus | 29.01 | 27.33 |
| KRH16521 | Soybean | nucleus | 27.78 | 27.19 |
| KRH18131 | Soybean | nucleus | 28.09 | 27.08 |
| KRH53438 | Soybean | nucleus | 28.4 | 26.36 |
| KRH75571 | Soybean | nucleus | 34.88 | 26.34 |
| KRH71094 | Soybean | nucleus | 33.95 | 24.66 |
Protein Annotations
| EntrezGene:100805420 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02002230 | ncoils:Coil | EnsemblPlantsGene:GLYMA_04G098400 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | UniProt:I1JVA4 |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH62289 | ProteinID:KRH62289 | ProteinID:KRH62289.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002339954 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:8914410..8916406
Molecular Weight (calculated)
36452.2 Da
IEP (calculated)
6.176
GRAVY (calculated)
-0.443
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVFPQ DPFTYGCDKD YLYSLVEHNY GNFQAAEEEK VLLGIINNNI EHNFHANWDS SSTSMLQNVK EQQWDSHSSP EACTVDQSMT TAPFPPPPPS
101: SSVEATVTAT SRRKRRRTKS AKNTEEIENQ RRTHIAVERN RRKQMNEYLA VLRSLMPSSY VQRGDQASII GGAINFVKEL EQLLQSMEGQ KRTNQAQENV
201: VGLNGSTTTP FAEFFTFPQY TTRGRTMAQE QKQWAVADIE VTMVDSHANL KVLSKKQPGQ LMKIVVGLQS LMLSILHLNV STLDDMVLYS ISVKVEDGCR
301: LNTVDEIAAA VNQLLRTIQE VTFS
101: SSVEATVTAT SRRKRRRTKS AKNTEEIENQ RRTHIAVERN RRKQMNEYLA VLRSLMPSSY VQRGDQASII GGAINFVKEL EQLLQSMEGQ KRTNQAQENV
201: VGLNGSTTTP FAEFFTFPQY TTRGRTMAQE QKQWAVADIE VTMVDSHANL KVLSKKQPGQ LMKIVVGLQS LMLSILHLNV STLDDMVLYS ISVKVEDGCR
301: LNTVDEIAAA VNQLLRTIQE VTFS
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.