Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37634 | Canola | nucleus | 69.21 | 99.56 |
| CDX96382 | Canola | nucleus | 94.51 | 95.38 |
| AT1G72210.1 | Thale cress | nucleus | 81.71 | 83.75 |
| CDX68274 | Canola | nucleus | 80.18 | 81.17 |
| CDY50447 | Canola | nucleus | 80.18 | 81.17 |
| CDX82171 | Canola | nucleus | 76.83 | 77.3 |
| CDY03650 | Canola | nucleus | 76.22 | 76.69 |
| CDY41479 | Canola | nucleus | 58.23 | 66.78 |
| CDX91680 | Canola | nucleus | 56.4 | 64.69 |
| CDY04811 | Canola | nucleus | 58.84 | 64.12 |
| CDY21365 | Canola | nucleus | 57.93 | 63.12 |
| CDY12528 | Canola | nucleus | 53.96 | 62.77 |
| CDY46652 | Canola | nucleus | 52.74 | 61.35 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 51.22 | 54.19 |
| Solyc12g087850.1.1 | Tomato | nucleus | 25.0 | 50.62 |
| KRH62289 | Soybean | nucleus | 49.09 | 49.69 |
| KRH16792 | Soybean | nucleus | 48.17 | 48.77 |
| KRH53000 | Soybean | nucleus | 48.48 | 47.6 |
| PGSC0003DMT400005446 | Potato | nucleus | 48.48 | 46.09 |
| KRH72411 | Soybean | nucleus | 47.56 | 45.09 |
| Solyc04g074810.2.1 | Tomato | extracellular | 48.17 | 44.51 |
| PGSC0003DMT400045820 | Potato | nucleus | 39.63 | 43.92 |
| CDY65719 | Canola | nucleus | 35.98 | 39.2 |
| CDY37820 | Canola | nucleus | 25.91 | 38.99 |
| CDY41734 | Canola | nucleus | 35.67 | 38.87 |
| CDY03201 | Canola | cytosol | 20.12 | 36.46 |
| CDY63053 | Canola | nucleus | 35.67 | 36.11 |
| CDX77682 | Canola | nucleus | 35.37 | 35.8 |
| CDY33966 | Canola | nucleus | 32.62 | 35.43 |
| CDY11386 | Canola | nucleus | 28.05 | 32.97 |
| CDY51710 | Canola | nucleus | 31.1 | 32.8 |
| CDY35175 | Canola | nucleus | 29.27 | 32.65 |
| CDY07143 | Canola | nucleus | 29.88 | 31.61 |
| CDY41561 | Canola | nucleus | 28.96 | 30.45 |
| CDX80049 | Canola | nucleus | 28.66 | 30.03 |
| CDY24717 | Canola | nucleus | 18.29 | 29.85 |
| CDY48013 | Canola | nucleus | 28.66 | 29.56 |
| CDY68483 | Canola | nucleus | 28.66 | 29.38 |
| CDY05233 | Canola | nucleus | 17.99 | 28.92 |
| CDX76598 | Canola | nucleus | 27.74 | 28.89 |
| CDY08066 | Canola | nucleus | 17.99 | 28.5 |
| CDY58338 | Canola | nucleus | 17.99 | 28.5 |
| CDY55926 | Canola | nucleus | 28.05 | 28.48 |
| CDY27521 | Canola | nucleus | 26.83 | 28.39 |
| CDY18843 | Canola | nucleus | 17.07 | 27.86 |
| CDY55929 | Canola | nucleus | 26.52 | 26.05 |
| CDX85167 | Canola | nucleus | 29.27 | 24.68 |
| CDX77460 | Canola | nucleus | 26.22 | 24.16 |
| CDX92996 | Canola | nucleus | 29.57 | 23.95 |
| CDX94841 | Canola | nucleus | 28.96 | 23.28 |
| CDY19692 | Canola | nucleus | 24.39 | 22.66 |
| CDY47059 | Canola | nucleus | 24.09 | 22.64 |
| CDY14397 | Canola | nucleus | 24.39 | 22.54 |
| CDY38734 | Canola | nucleus | 23.78 | 22.1 |
| CDY18083 | Canola | nucleus | 25.61 | 21.88 |
| CDY64587 | Canola | nucleus | 24.39 | 21.56 |
| CDX96201 | Canola | nucleus | 22.56 | 21.02 |
Protein Annotations
| EnsemblPlants:CDX72877 | EnsemblPlantsGene:GSBRNA2T00103287001 | Gene3D:4.10.280.10 | GO:A0A078C7M8 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX72877 | ProteinID:CDX72877.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEF6B0 | MapMan:15.5.32 | : |
Description
BnaC06g33250D
Coordinates
chrLK031797:+:868891..871614
Molecular Weight (calculated)
36501.7 Da
IEP (calculated)
5.671
GRAVY (calculated)
-0.643
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVYLQ DPLSYSSCKD FPFQDLYFQQ GEDQDPLDTK NNIKLGQEQR QGFGSINYNG KGGDNSVDYS YNDQVDLQWP PHELPYGSTV DTRNHPPPSD
101: MAATGGERRK RRRTRSNKNK EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPCYSQRG DQASIVGGAI NYLKELQHQL QSMEPPVKIT ATEDTGATAA
201: SAGDQNNTIS ASSSGPFSDF FAFPQYSSRP SSSSVAEGTA EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH LNVTTHDNSV LYSISLKVEE
301: GSQLNTVEDI AAAVNQILMR IEEESPLS
101: MAATGGERRK RRRTRSNKNK EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPCYSQRG DQASIVGGAI NYLKELQHQL QSMEPPVKIT ATEDTGATAA
201: SAGDQNNTIS ASSSGPFSDF FAFPQYSSRP SSSSVAEGTA EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH LNVTTHDNSV LYSISLKVEE
301: GSQLNTVEDI AAAVNQILMR IEEESPLS
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.