Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
CDX68212 | |
CDX73014 | |
CDX77682 | nucleus |
CDX83546 | |
CDX83731 | |
CDX84824 | |
CDX93852 | |
CDX97806 | |
CDX99756 | |
CDY03201 | nucleus |
CDY08769 | nucleus |
CDY10749 | |
CDY11089 | |
CDY13580 | |
CDY21916 | |
CDY22079 | |
CDY23988 | |
CDY29658 | |
CDY35175 | nucleus |
CDY37835 | nucleus |
CDY38963 | |
CDY39435 | |
CDY43422 | |
CDY45968 | |
CDY47130 | |
CDY57605 | |
CDY60144 | |
CDY62942 | |
CDY63053 | nucleus |
CDY64892 | |
CDY66559 | |
CDY69978 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX94841 | Canola | nucleus | 97.78 | 97.06 |
Bra028357.1-P | Field mustard | nucleus | 90.62 | 91.75 |
AT3G24140.1 | Thale cress | nucleus | 90.86 | 88.89 |
CDX85167 | Canola | nucleus | 82.72 | 86.12 |
CDX77460 | Canola | nucleus | 71.11 | 80.9 |
CDY18083 | Canola | nucleus | 68.89 | 72.66 |
CDY64587 | Canola | nucleus | 65.68 | 71.7 |
GSMUA_Achr8P28400_001 | Banana | nucleus | 33.83 | 68.84 |
GSMUA_Achr2P06030_001 | Banana | nucleus | 49.63 | 63.01 |
VIT_05s0029g00050.t01 | Wine grape | nucleus | 61.73 | 62.97 |
Solyc05g053660.1.1 | Tomato | nucleus | 57.53 | 60.84 |
PGSC0003DMT400040761 | Potato | nucleus | 57.78 | 60.0 |
KRH75571 | Soybean | nucleus | 62.22 | 58.74 |
KRH71094 | Soybean | nucleus | 62.22 | 56.5 |
Os05t0586300-00 | Rice | nucleus | 46.91 | 49.1 |
TraesCS1D01G289400.1 | Wheat | nucleus | 48.15 | 46.54 |
TraesCS1B01G300100.1 | Wheat | nucleus | 47.9 | 46.52 |
TraesCS1A01G290800.1 | Wheat | nucleus | 47.65 | 45.95 |
Zm00001d009715_P001 | Maize | nucleus | 47.16 | 45.69 |
HORVU1Hr1G071330.3 | Barley | nucleus | 47.16 | 43.81 |
KXG22636 | Sorghum | nucleus | 47.9 | 42.45 |
CDY24717 | Canola | nucleus | 20.74 | 41.79 |
CDY08066 | Canola | nucleus | 20.99 | 41.06 |
CDY58338 | Canola | nucleus | 20.99 | 41.06 |
CDY18843 | Canola | nucleus | 20.25 | 40.8 |
CDY05233 | Canola | nucleus | 20.49 | 40.69 |
CDY37634 | Canola | nucleus | 21.73 | 38.6 |
CDY41479 | Canola | nucleus | 23.95 | 33.92 |
CDY03201 | Canola | cytosol | 15.06 | 33.7 |
CDX91680 | Canola | nucleus | 23.21 | 32.87 |
CDY19692 | Canola | nucleus | 28.15 | 32.29 |
CDY12528 | Canola | nucleus | 22.47 | 32.27 |
CDY14397 | Canola | nucleus | 28.15 | 32.11 |
CDY47059 | Canola | nucleus | 27.65 | 32.09 |
CDY51710 | Canola | nucleus | 24.44 | 31.83 |
CDY04811 | Canola | nucleus | 23.46 | 31.56 |
CDY38734 | Canola | nucleus | 27.41 | 31.44 |
CDY21365 | Canola | nucleus | 23.21 | 31.23 |
CDY46652 | Canola | nucleus | 21.73 | 31.21 |
CDY07143 | Canola | nucleus | 23.46 | 30.65 |
CDY65719 | Canola | nucleus | 22.72 | 30.56 |
CDX77682 | Canola | nucleus | 24.44 | 30.56 |
CDY63053 | Canola | nucleus | 24.44 | 30.56 |
CDY11386 | Canola | nucleus | 20.99 | 30.47 |
CDX96382 | Canola | nucleus | 24.44 | 30.46 |
CDY35175 | Canola | nucleus | 21.98 | 30.27 |
CDY41734 | Canola | nucleus | 22.47 | 30.23 |
CDX68274 | Canola | nucleus | 23.95 | 29.94 |
CDY50447 | Canola | nucleus | 23.95 | 29.94 |
CDX72877 | Canola | nucleus | 23.95 | 29.57 |
CDY37820 | Canola | nucleus | 15.8 | 29.36 |
CDY03650 | Canola | nucleus | 23.46 | 29.14 |
CDX82171 | Canola | nucleus | 23.46 | 29.14 |
CDX96201 | Canola | nucleus | 24.94 | 28.69 |
CDY33966 | Canola | nucleus | 20.99 | 28.15 |
CDY48013 | Canola | nucleus | 21.73 | 27.67 |
CDY27521 | Canola | nucleus | 20.99 | 27.42 |
CDX76598 | Canola | nucleus | 21.23 | 27.3 |
CDY68483 | Canola | nucleus | 21.23 | 26.88 |
CDX80049 | Canola | nucleus | 20.74 | 26.84 |
CDY55926 | Canola | nucleus | 20.99 | 26.32 |
CDY41561 | Canola | nucleus | 20.25 | 26.28 |
CDY55929 | Canola | nucleus | 19.01 | 23.05 |
Protein Annotations
EnsemblPlants:CDX92996 | EnsemblPlantsGene:GSBRNA2T00154882001 | Gene3D:4.10.280.10 | GO:A0A078DUK8 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
PANTHER:PTHR11514 | PANTHER:PTHR11514:SF61 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX92996 | ProteinID:CDX92996.1 |
SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDF278 | MapMan:15.5.32 | : |
Description
BnaA03g37180D
Coordinates
chrLK031874:-:583284..585741
Molecular Weight (calculated)
45489.5 Da
IEP (calculated)
5.131
GRAVY (calculated)
-0.707
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKDYSAPNF LGESSGGNDD NNSGMIDYMF NRNLQQQKQS MPQQHQLSPS GFGATTPTFD KMSFADVMQF ADFGPKLALN QTRNQDDQET GLDPVYFLKF
101: PVLNDKIEDH NQTHNLMSQE GGECEGNIGN VFLEEKENQE DENDNNSVQL RFIGGEEGDR ENKNDTTKEV KSKRKRARTS KTSEEVESQR MTHIAVERNR
201: RKQMNEHLRV LRSLMPGSYV QRGDQASIIG GAIEFVRELE QLLQCLESQK RRRILGETGN RQIGDMTTTM TSSSPITSVA NPLISTGNVT ELEGGGGGIR
301: EETAENKSCL ADVEVKLLGF DAMIKILSRR RPGQLIKTIA ALEDLHLSIL HTNITTMEQT VLYSFNVKAS KYKHVQITSE TRFTAEDIAS SIQEIFSFIH
401: ANTTM
101: PVLNDKIEDH NQTHNLMSQE GGECEGNIGN VFLEEKENQE DENDNNSVQL RFIGGEEGDR ENKNDTTKEV KSKRKRARTS KTSEEVESQR MTHIAVERNR
201: RKQMNEHLRV LRSLMPGSYV QRGDQASIIG GAIEFVRELE QLLQCLESQK RRRILGETGN RQIGDMTTTM TSSSPITSVA NPLISTGNVT ELEGGGGGIR
301: EETAENKSCL ADVEVKLLGF DAMIKILSRR RPGQLIKTIA ALEDLHLSIL HTNITTMEQT VLYSFNVKAS KYKHVQITSE TRFTAEDIAS SIQEIFSFIH
401: ANTTM
001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM
Arabidopsis Description
FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.