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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G24140.1 CDX83731 AT1G19980.1 21798944
AT3G24140.1 CDY43422 AT1G19980.1 21798944
AT3G24140.1 CDY57605 AT1G19980.1 21798944
AT3G24140.1 CDY62942 AT1G19980.1 21798944
AT3G24140.1 CDX93852 AT1G62990.1 21798944
AT3G24140.1 CDY45968 AT1G62990.1 21798944
AT3G24140.1 CDY64892 AT1G62990.1 21798944
AT3G24140.1 CDY66559 AT1G62990.1 21798944
AT3G24140.1 CDX68212 AT1G73790.1 21798944
AT3G24140.1 CDX73014 AT1G73790.1 21798944
AT3G24140.1 CDY11089 AT1G73790.1 21798944
AT3G24140.1 CDY60144 AT1G73790.1 21798944
AT3G24140.1 CDX84824 AT2G30590.1 21798944
AT3G24140.1 CDX97806 AT2G30590.1 21798944
AT3G24140.1 CDY10749 AT2G30590.1 21798944
AT3G24140.1 CDY23988 AT2G30590.1 21798944
AT3G24140.1 CDY29658 AT2G30590.1 21798944
AT3G24140.1 CDY47130 AT2G30590.1 21798944
AT3G24140.1 CDX83546 AT3G25710.1 21798944
AT3G24140.1 CDX99756 AT3G25710.1 21798944
AT3G24140.1 CDY13580 AT3G25710.1 21798944
AT3G24140.1 CDY21916 AT4G02770.1 21798944
AT3G24140.1 CDY22079 AT4G02770.1 21798944
AT3G24140.1 CDY38963 AT5G45600.1 21798944
AT3G24140.1 CDY39435 AT5G45600.1 21798944
AT3G24140.1 CDX77682 AT5G46690.1 17088607
AT3G24140.1 CDY03201 AT5G46690.1 17088607
AT3G24140.1 CDY35175 AT5G46690.1 17088607
AT3G24140.1 CDY63053 AT5G46690.1 17088607
AT3G24140.1 CDX77682 AT5G46690.1 21798944
AT3G24140.1 CDY03201 AT5G46690.1 21798944
AT3G24140.1 CDY35175 AT5G46690.1 21798944
AT3G24140.1 CDY63053 AT5G46690.1 21798944
AT3G24140.1 CDY08769 AT5G65640.1 17088607
AT3G24140.1 CDY37835 AT5G65640.1 17088607
AT3G24140.1 CDY69978 AT5G65640.1 17088607
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX94841 Canola nucleus 97.78 97.06
Bra028357.1-P Field mustard nucleus 90.62 91.75
AT3G24140.1 Thale cress nucleus 90.86 88.89
CDX85167 Canola nucleus 82.72 86.12
CDX77460 Canola nucleus 71.11 80.9
CDY18083 Canola nucleus 68.89 72.66
CDY64587 Canola nucleus 65.68 71.7
GSMUA_Achr8P28400_001 Banana nucleus 33.83 68.84
GSMUA_Achr2P06030_001 Banana nucleus 49.63 63.01
VIT_05s0029g00050.t01 Wine grape nucleus 61.73 62.97
Solyc05g053660.1.1 Tomato nucleus 57.53 60.84
PGSC0003DMT400040761 Potato nucleus 57.78 60.0
KRH75571 Soybean nucleus 62.22 58.74
KRH71094 Soybean nucleus 62.22 56.5
Os05t0586300-00 Rice nucleus 46.91 49.1
TraesCS1D01G289400.1 Wheat nucleus 48.15 46.54
TraesCS1B01G300100.1 Wheat nucleus 47.9 46.52
TraesCS1A01G290800.1 Wheat nucleus 47.65 45.95
Zm00001d009715_P001 Maize nucleus 47.16 45.69
HORVU1Hr1G071330.3 Barley nucleus 47.16 43.81
KXG22636 Sorghum nucleus 47.9 42.45
CDY24717 Canola nucleus 20.74 41.79
CDY08066 Canola nucleus 20.99 41.06
CDY58338 Canola nucleus 20.99 41.06
CDY18843 Canola nucleus 20.25 40.8
CDY05233 Canola nucleus 20.49 40.69
CDY37634 Canola nucleus 21.73 38.6
CDY41479 Canola nucleus 23.95 33.92
CDY03201 Canola cytosol 15.06 33.7
CDX91680 Canola nucleus 23.21 32.87
CDY19692 Canola nucleus 28.15 32.29
CDY12528 Canola nucleus 22.47 32.27
CDY14397 Canola nucleus 28.15 32.11
CDY47059 Canola nucleus 27.65 32.09
CDY51710 Canola nucleus 24.44 31.83
CDY04811 Canola nucleus 23.46 31.56
CDY38734 Canola nucleus 27.41 31.44
CDY21365 Canola nucleus 23.21 31.23
CDY46652 Canola nucleus 21.73 31.21
CDY07143 Canola nucleus 23.46 30.65
CDY65719 Canola nucleus 22.72 30.56
CDX77682 Canola nucleus 24.44 30.56
CDY63053 Canola nucleus 24.44 30.56
CDY11386 Canola nucleus 20.99 30.47
CDX96382 Canola nucleus 24.44 30.46
CDY35175 Canola nucleus 21.98 30.27
CDY41734 Canola nucleus 22.47 30.23
CDX68274 Canola nucleus 23.95 29.94
CDY50447 Canola nucleus 23.95 29.94
CDX72877 Canola nucleus 23.95 29.57
CDY37820 Canola nucleus 15.8 29.36
CDY03650 Canola nucleus 23.46 29.14
CDX82171 Canola nucleus 23.46 29.14
CDX96201 Canola nucleus 24.94 28.69
CDY33966 Canola nucleus 20.99 28.15
CDY48013 Canola nucleus 21.73 27.67
CDY27521 Canola nucleus 20.99 27.42
CDX76598 Canola nucleus 21.23 27.3
CDY68483 Canola nucleus 21.23 26.88
CDX80049 Canola nucleus 20.74 26.84
CDY55926 Canola nucleus 20.99 26.32
CDY41561 Canola nucleus 20.25 26.28
CDY55929 Canola nucleus 19.01 23.05
Protein Annotations
EnsemblPlants:CDX92996EnsemblPlantsGene:GSBRNA2T00154882001Gene3D:4.10.280.10GO:A0A078DUK8GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_dom
PANTHER:PTHR11514PANTHER:PTHR11514:SF61PFAM:PF00010PFscan:PS50888ProteinID:CDX92996ProteinID:CDX92996.1
SEG:segSMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EDF278MapMan:15.5.32:
Description
BnaA03g37180D
Coordinates
chrLK031874:-:583284..585741
Molecular Weight (calculated)
45489.5 Da
IEP (calculated)
5.131
GRAVY (calculated)
-0.707
Length
405 amino acids
Sequence
(BLAST)
001: MDKDYSAPNF LGESSGGNDD NNSGMIDYMF NRNLQQQKQS MPQQHQLSPS GFGATTPTFD KMSFADVMQF ADFGPKLALN QTRNQDDQET GLDPVYFLKF
101: PVLNDKIEDH NQTHNLMSQE GGECEGNIGN VFLEEKENQE DENDNNSVQL RFIGGEEGDR ENKNDTTKEV KSKRKRARTS KTSEEVESQR MTHIAVERNR
201: RKQMNEHLRV LRSLMPGSYV QRGDQASIIG GAIEFVRELE QLLQCLESQK RRRILGETGN RQIGDMTTTM TSSSPITSVA NPLISTGNVT ELEGGGGGIR
301: EETAENKSCL ADVEVKLLGF DAMIKILSRR RPGQLIKTIA ALEDLHLSIL HTNITTMEQT VLYSFNVKAS KYKHVQITSE TRFTAEDIAS SIQEIFSFIH
401: ANTTM
Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)
001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM
Arabidopsis Description
FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.