Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41479 | Canola | nucleus | 96.5 | 96.5 |
| Bra016377.1-P | Field mustard | nucleus | 95.8 | 90.73 |
| CDY04811 | Canola | nucleus | 83.22 | 79.07 |
| CDY21365 | Canola | nucleus | 82.87 | 78.74 |
| CDY12528 | Canola | nucleus | 77.27 | 78.37 |
| CDY46652 | Canola | nucleus | 76.22 | 77.31 |
| CDY37634 | Canola | nucleus | 54.55 | 68.42 |
| AT1G22490.2 | Thale cress | nucleus | 75.87 | 66.56 |
| CDX96382 | Canola | nucleus | 65.03 | 57.23 |
| CDY50447 | Canola | nucleus | 64.34 | 56.79 |
| CDX68274 | Canola | nucleus | 63.99 | 56.48 |
| CDX72877 | Canola | nucleus | 64.69 | 56.4 |
| CDY03650 | Canola | nucleus | 61.54 | 53.99 |
| CDX82171 | Canola | nucleus | 61.19 | 53.68 |
| VIT_18s0001g06650.t01 | Wine grape | nucleus | 54.55 | 50.32 |
| Solyc12g087850.1.1 | Tomato | nucleus | 27.62 | 48.77 |
| KRH62289 | Soybean | nucleus | 52.8 | 46.6 |
| KRH16792 | Soybean | nucleus | 52.1 | 45.99 |
| KRH53000 | Soybean | nucleus | 52.45 | 44.91 |
| KRH72411 | Soybean | nucleus | 51.75 | 42.77 |
| PGSC0003DMT400005446 | Potato | nucleus | 51.4 | 42.61 |
| Solyc04g074810.2.1 | Tomato | extracellular | 51.4 | 41.41 |
| PGSC0003DMT400045820 | Potato | nucleus | 42.66 | 41.22 |
| CDY37820 | Canola | nucleus | 29.37 | 38.53 |
| CDY03201 | Canola | cytosol | 24.13 | 38.12 |
| CDY65719 | Canola | nucleus | 37.06 | 35.22 |
| CDY41734 | Canola | nucleus | 36.71 | 34.88 |
| CDY63053 | Canola | nucleus | 39.51 | 34.88 |
| CDY33966 | Canola | nucleus | 36.36 | 34.44 |
| CDX77682 | Canola | nucleus | 38.81 | 34.26 |
| CDY35175 | Canola | nucleus | 33.92 | 32.99 |
| CDY11386 | Canola | nucleus | 31.47 | 32.26 |
| CDY51710 | Canola | nucleus | 32.87 | 30.23 |
| CDY41561 | Canola | nucleus | 32.87 | 30.13 |
| CDY48013 | Canola | nucleus | 32.87 | 29.56 |
| CDX80049 | Canola | nucleus | 32.17 | 29.39 |
| CDY68483 | Canola | nucleus | 32.87 | 29.38 |
| CDY07143 | Canola | nucleus | 31.82 | 29.35 |
| CDY27521 | Canola | nucleus | 31.47 | 29.03 |
| CDY55926 | Canola | nucleus | 32.17 | 28.48 |
| CDX76598 | Canola | nucleus | 30.77 | 27.94 |
| CDY24717 | Canola | nucleus | 19.23 | 27.36 |
| CDY05233 | Canola | nucleus | 18.88 | 26.47 |
| CDY58338 | Canola | nucleus | 18.88 | 26.09 |
| CDY08066 | Canola | nucleus | 18.88 | 26.09 |
| CDY18843 | Canola | nucleus | 18.18 | 25.87 |
| CDY55929 | Canola | nucleus | 30.07 | 25.75 |
| CDX85167 | Canola | nucleus | 32.52 | 23.91 |
| CDX92996 | Canola | nucleus | 32.87 | 23.21 |
| CDX77460 | Canola | nucleus | 28.32 | 22.75 |
| CDX94841 | Canola | nucleus | 32.17 | 22.55 |
| CDY19692 | Canola | nucleus | 27.27 | 22.1 |
| CDY47059 | Canola | nucleus | 26.92 | 22.06 |
| CDY14397 | Canola | nucleus | 27.27 | 21.97 |
| CDY38734 | Canola | nucleus | 26.57 | 21.53 |
| CDY64587 | Canola | nucleus | 26.92 | 20.75 |
| CDX96201 | Canola | nucleus | 25.52 | 20.74 |
| CDY18083 | Canola | nucleus | 27.62 | 20.57 |
Protein Annotations
| EnsemblPlants:CDX91680 | EnsemblPlantsGene:GSBRNA2T00153148001 | Gene3D:4.10.280.10 | GO:A0A078DQS6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX91680 | ProteinID:CDX91680.1 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE9083 | MapMan:15.5.32 | : |
Description
BnaC08g05990D
Coordinates
chrLK031869:-:133692..135631
Molecular Weight (calculated)
32728.9 Da
IEP (calculated)
6.412
GRAVY (calculated)
-0.562
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLESVVYPQ DSLGYPSTCK YFMFHDLYYQ EEVVSFVEND KEEDRQWRDY HQYPLLPSLE EELGLPAIDM ESPPPLQQRR KRRRTRSNKN VEEIENQRMT
101: HIAVERNRRK QMNEYLAVLR SLMPSSYAQR GDQASIVGGA INYVKKLEHI LQSMEPNRTT TIPHEANTST SSLVDPFSDF FSFPQYSTKS SSITEGSSSP
201: AEIEVTVAEG HANIKIMAKK KPKQLLKLVA SIQSLRLALL HLNVTTLDNS ILYSISVKVE EGSQLTTVDD IATALNKIMR RIQEES
101: HIAVERNRRK QMNEYLAVLR SLMPSSYAQR GDQASIVGGA INYVKKLEHI LQSMEPNRTT TIPHEANTST SSLVDPFSDF FSFPQYSTKS SSITEGSSSP
201: AEIEVTVAEG HANIKIMAKK KPKQLLKLVA SIQSLRLALL HLNVTTLDNS ILYSISVKVE EGSQLTTVDD IATALNKIMR RIQEES
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.