Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24717 | Canola | nucleus | 95.1 | 96.52 |
| AT3G06120.1 | Thale cress | nucleus | 87.75 | 88.61 |
| CDY18843 | Canola | nucleus | 87.25 | 88.56 |
| CDY08066 | Canola | nucleus | 88.73 | 87.44 |
| CDY58338 | Canola | nucleus | 88.73 | 87.44 |
| VIT_05s0020g02700.t01 | Wine grape | nucleus | 63.24 | 67.89 |
| KRH20902 | Soybean | cytosol | 61.76 | 65.97 |
| KRH11385 | Soybean | cytosol | 61.27 | 65.44 |
| Solyc01g080050.2.1 | Tomato | nucleus | 60.29 | 63.08 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 58.82 | 62.5 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 58.82 | 60.61 |
| Zm00001d009778_P001 | Maize | nucleus | 56.37 | 52.51 |
| KXG22733 | Sorghum | nucleus | 56.37 | 48.32 |
| TraesCS2A01G120700.1 | Wheat | nucleus | 49.02 | 46.3 |
| TraesCS2D01G122800.1 | Wheat | nucleus | 48.53 | 46.05 |
| Os05t0597000-00 | Rice | nucleus | 50.49 | 45.37 |
| HORVU2Hr1G020990.1 | Barley | nucleus | 49.02 | 42.02 |
| TraesCS2B01G141600.1 | Wheat | plastid | 49.02 | 42.02 |
| CDY19692 | Canola | nucleus | 48.53 | 28.05 |
| CDY14397 | Canola | nucleus | 48.53 | 27.89 |
| CDY47059 | Canola | nucleus | 47.55 | 27.79 |
| CDY38734 | Canola | nucleus | 47.06 | 27.2 |
| CDY37634 | Canola | nucleus | 28.92 | 25.88 |
| CDY11386 | Canola | nucleus | 34.8 | 25.45 |
| CDX96201 | Canola | nucleus | 42.16 | 24.43 |
| CDY51710 | Canola | nucleus | 36.27 | 23.79 |
| CDY07143 | Canola | nucleus | 34.8 | 22.9 |
| CDX76598 | Canola | nucleus | 35.29 | 22.86 |
| CDY03201 | Canola | cytosol | 19.61 | 22.1 |
| CDX80049 | Canola | nucleus | 33.82 | 22.04 |
| CDY48013 | Canola | nucleus | 34.31 | 22.01 |
| CDY68483 | Canola | nucleus | 34.31 | 21.88 |
| CDY41561 | Canola | nucleus | 33.33 | 21.79 |
| CDX77460 | Canola | nucleus | 37.75 | 21.63 |
| CDY27521 | Canola | nucleus | 32.84 | 21.61 |
| CDX85167 | Canola | nucleus | 41.18 | 21.59 |
| CDY55926 | Canola | nucleus | 33.82 | 21.36 |
| CDY37820 | Canola | nucleus | 22.06 | 20.64 |
| CDX92996 | Canola | nucleus | 40.69 | 20.49 |
| CDX94841 | Canola | nucleus | 40.69 | 20.34 |
| CDY41734 | Canola | nucleus | 28.92 | 19.6 |
| CDY65719 | Canola | nucleus | 28.92 | 19.6 |
| CDY64587 | Canola | nucleus | 34.8 | 19.14 |
| CDY18083 | Canola | nucleus | 35.78 | 19.01 |
| CDY41479 | Canola | nucleus | 26.47 | 18.88 |
| CDX91680 | Canola | nucleus | 26.47 | 18.88 |
| CDY04811 | Canola | nucleus | 27.45 | 18.6 |
| CDY21365 | Canola | nucleus | 27.45 | 18.6 |
| CDY63053 | Canola | nucleus | 29.41 | 18.52 |
| CDY35175 | Canola | nucleus | 26.47 | 18.37 |
| CDY55929 | Canola | nucleus | 29.9 | 18.26 |
| CDX77682 | Canola | nucleus | 28.92 | 18.21 |
| CDY46652 | Canola | nucleus | 25.0 | 18.09 |
| CDX72877 | Canola | nucleus | 28.92 | 17.99 |
| CDY33966 | Canola | nucleus | 26.47 | 17.88 |
| CDX96382 | Canola | nucleus | 28.43 | 17.85 |
| CDY12528 | Canola | nucleus | 24.51 | 17.73 |
| CDY50447 | Canola | nucleus | 27.45 | 17.28 |
| CDX68274 | Canola | nucleus | 27.45 | 17.28 |
| CDX82171 | Canola | nucleus | 26.96 | 16.87 |
| CDY03650 | Canola | nucleus | 26.96 | 16.87 |
Protein Annotations
| EnsemblPlants:CDY05233 | EnsemblPlantsGene:GSBRNA2T00120047001 | Gene3D:4.10.280.10 | GO:A0A078F004 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR45509 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY05233 | ProteinID:CDY05233.1 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF3C37 | MapMan:15.5.32 | : | : |
Description
BnaC05g45700D
Coordinates
chrLK031960:+:477334..478562
Molecular Weight (calculated)
23176.3 Da
IEP (calculated)
8.954
GRAVY (calculated)
-0.095
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKEMQ QLVQVLESKK RRKTLNRSSS PYDHQTIEPS ISADTPNATT RMPFSKIENV
101: MSLMTTSTFK EVGACSNSHH ANVEAKISGS NVVLRVVSWR IEGQLVRIIS VLEKLSFQVL HLNISCMEES VLYFFVVKIG LECHLSLEEL TLEVQKSFVP
201: EAIV
101: MSLMTTSTFK EVGACSNSHH ANVEAKISGS NVVLRVVSWR IEGQLVRIIS VLEKLSFQVL HLNISCMEES VLYFFVVKIG LECHLSLEEL TLEVQKSFVP
201: EAIV
001: MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK RRKTLNRPSF PYDHQTIEPS SLGAATTRVP FSRIENVMTT
101: STFKEVGACC NSPHANVEAK ISGSNVVLRV VSRRIVGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS LEELTLEVQK SFVSDEVIVS
201: TN
101: STFKEVGACC NSPHANVEAK ISGSNVVLRV VSRRIVGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS LEELTLEVQK SFVSDEVIVS
201: TN
Arabidopsis Description
MUTETranscription factor MUTE [Source:UniProtKB/Swiss-Prot;Acc:Q9M8K6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.