Factsheet for Os05t0597000-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21110_001	Banana	nucleus	56.39	66.67
TraesCS2D01G122800.1	Wheat	nucleus	61.23	64.65
GSMUA_Achr7P21190_001	Banana	nucleus	56.39	64.65
TraesCS2A01G120700.1	Wheat	nucleus	61.23	64.35
VIT_05s0020g02700.t01	Wine grape	nucleus	52.42	62.63
Solyc01g080050.2.1	Tomato	nucleus	53.74	62.56
Zm00001d009778_P001	Maize	nucleus	59.91	62.1
KRH20902	Soybean	cytosol	51.1	60.73
KRH11385	Soybean	cytosol	50.22	59.69
KXG22733	Sorghum	nucleus	62.56	59.66
TraesCS2B01G141600.1	Wheat	plastid	61.23	58.4
HORVU2Hr1G020990.1	Barley	nucleus	60.35	57.56
AT3G06120.1	Thale cress	nucleus	48.02	53.96
Bra040234.1-P	Field mustard	nucleus	46.26	52.24
CDY18843	Canola	nucleus	46.26	52.24
Bra001183.1-P	Field mustard	nucleus	47.58	52.17
CDY58338	Canola	nucleus	47.58	52.17
CDY08066	Canola	nucleus	47.58	52.17
CDY24717	Canola	nucleus	45.37	51.24
Bra020775.1-P	Field mustard	nucleus	45.37	51.24
CDY05233	Canola	nucleus	45.37	50.49
Os02t0759000-01	Rice	cytosol	21.59	32.24
Os03t0188400-01	Rice	nucleus	36.12	24.92
Os02t0257500-00	Rice	nucleus	44.05	24.1
Os03t0122100-00	Rice	mitochondrion, nucleus, plastid	32.6	23.79
Os09t0468700-00	Rice	nucleus	36.56	23.65
Os06t0526100-01	Rice	cytosol, endoplasmic reticulum, nucleus	40.53	23.29
Os05t0586300-00	Rice	nucleus	39.65	23.26
Os10t0376900-01	Rice	nucleus	32.6	22.56
Os02t0691500-01	Rice	nucleus	36.56	22.25
Os08t0483900-01	Rice	nucleus	33.48	20.94

Protein Annotations

EntrezGene:107275355	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:AAW57801.1	ProteinID:BAS95686.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009913	GO:GO:0009987	GO:GO:0010374
GO:GO:0016020	GO:GO:0016021	GO:GO:0030154	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlantsGene:Os05g0597000	EnsemblPlants:Os05t0597000-00	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR45509
UniProt:Q5KQG3	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00003B341D	RefSeq:XP_015638702.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

basic helix-loop-helix protein 055Similar to DNA binding protein. (Os05t0597000-00)

Coordinates

chr5:+:29749747..29750525

Molecular Weight (calculated)

24519.5 Da

IEP (calculated)

8.368

GRAVY (calculated)

-0.150

Length

227 amino acids

Sequence
(BLAST)

001: MSHIAVERNR RRQMNDHLKV LRSLTPAFYI KRGDQASIIG GAIDFIKELQ TLLQSLEAQK KRRQQPQAHL ISPASISASG GGSPSPTPSP RSLITSCSPT
101: AAAGSSAGSS SSISPKDENK QQLQLVAELA ACCNSPMADV EARISGANVL LRTLSRRAPP VRIIALLESL HLEVLHLNIT TMDDTVLYSF VLKIGLDCHL
201: SVDDLAMEVH QSFMPPPAAH PDNHLHS

Best Arabidopsis Sequence Match ( AT3G06120.1 )
(BLAST)

001: MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK RRKTLNRPSF PYDHQTIEPS SLGAATTRVP FSRIENVMTT
101: STFKEVGACC NSPHANVEAK ISGSNVVLRV VSRRIVGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS LEELTLEVQK SFVSDEVIVS
201: TN

Arabidopsis Description

MUTETranscription factor MUTE [Source:UniProtKB/Swiss-Prot;Acc:Q9M8K6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.