Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053391_P001 | Maize | cytosol, nucleus, plastid | 60.72 | 67.2 |
| EES06610 | Sorghum | nucleus | 60.96 | 63.57 |
| Zm00001d016095_P001 | Maize | nucleus | 56.14 | 59.29 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 37.59 | 55.12 |
| GSMUA_Achr10P... | Banana | nucleus | 33.73 | 53.64 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 38.31 | 51.13 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 48.43 | 50.89 |
| KRH53438 | Soybean | nucleus | 41.2 | 49.0 |
| KRH64504 | Soybean | nucleus | 40.48 | 48.84 |
| Solyc03g007410.2.1 | Tomato | nucleus | 39.28 | 48.8 |
| VIT_16s0050g02500.t01 | Wine grape | nucleus | 39.04 | 47.93 |
| PGSC0003DMT400023497 | Potato | nucleus | 40.0 | 46.76 |
| KRH18131 | Soybean | nucleus | 37.83 | 46.73 |
| CDY47059 | Canola | nucleus | 39.04 | 46.42 |
| CDY19692 | Canola | nucleus | 39.28 | 46.18 |
| KRH16521 | Soybean | nucleus | 36.63 | 45.92 |
| CDY38734 | Canola | nucleus | 39.04 | 45.89 |
| CDY14397 | Canola | nucleus | 39.04 | 45.63 |
| AT5G53210.1 | Thale cress | nucleus | 40.0 | 45.6 |
| Os05t0597000-00 | Rice | nucleus | 24.1 | 44.05 |
| Bra029088.1-P | Field mustard | nucleus | 34.94 | 43.15 |
| Bra022638.1-P | Field mustard | nucleus | 34.94 | 41.43 |
| CDX96201 | Canola | nucleus | 34.94 | 41.19 |
| Bra003073.1-P | Field mustard | nucleus | 35.9 | 34.41 |
| Os02t0759000-01 | Rice | cytosol | 9.64 | 26.32 |
| Os10t0376900-01 | Rice | nucleus | 19.52 | 24.7 |
| Os03t0188400-01 | Rice | nucleus | 19.52 | 24.62 |
| Os05t0586300-00 | Rice | nucleus | 22.89 | 24.55 |
| Os09t0468700-00 | Rice | nucleus | 19.04 | 22.51 |
| Os03t0122100-00 | Rice | mitochondrion, nucleus, plastid | 16.63 | 22.19 |
| Os08t0483900-01 | Rice | nucleus | 19.28 | 22.04 |
| Os02t0691500-01 | Rice | nucleus | 18.55 | 20.64 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:BAD27965.1 | ProteinID:BAS77964.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os02g0257500 | EnsemblPlants:Os02t0257500-00 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF58 | UniProt:Q6ETQ5 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00003CE582 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
basic helix-loop-helix protein 053, SPEECHLESS 2Similar to DNA binding protein. (Os02t0257500-00)
Coordinates
chr2:-:8879339..8882660
Molecular Weight (calculated)
42286.3 Da
IEP (calculated)
7.826
GRAVY (calculated)
-0.064
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGGGGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA AAASTGAGGG ARTTTTTTAA NGRRREGRDE EKGGGGGGGP
101: PAQKKQKGSS SSSSSPAALA AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL QQVLRSLEAK KNRKAYADQV
201: LSPRPSPAAA ALMVKPTPPI SPRFAAAAAA GVPISPRTPT PGSPYNKHAA AAATARPPHP AAATSSCSVA YSMSPAMTPT SSSSTTTTTT HELSPAPAFL
301: PILDSLVTEL AARGGASCRP LVIPSSAAAI AGIVGVPDVR VEFAGPNLVL KTVSHRAPGQ ALKIIAALES LSLEILHVSI CTVDDATVLS FTIKIGIECE
401: LSAEELVQEI QQTFL
101: PAQKKQKGSS SSSSSPAALA AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL QQVLRSLEAK KNRKAYADQV
201: LSPRPSPAAA ALMVKPTPPI SPRFAAAAAA GVPISPRTPT PGSPYNKHAA AAATARPPHP AAATSSCSVA YSMSPAMTPT SSSSTTTTTT HELSPAPAFL
301: PILDSLVTEL AARGGASCRP LVIPSSAAAI AGIVGVPDVR VEFAGPNLVL KTVSHRAPGQ ALKIIAALES LSLEILHVSI CTVDDATVLS FTIKIGIECE
401: LSAEELVQEI QQTFL
001: MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD YENSSPKRKK QRLETRKEED EEEEDGDGEA EEDNKQDGQQ
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
101: KMSHVTVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVEYISEL QQVLQSLEAK KQRKTYAEVL SPRVVPSPRP SPPVLSPRKP PLSPRINHHQ
201: IHHHLLLPPI SPRTPQPTSP YRAIPPQLPL IPQPPLRSYS SLASCSSLGD PPPYSPASSS SSPSVSSNHE SSVINELVAN SKSALADVEV KFSGANVLLK
301: TVSHKIPGQV MKIIAALEDL ALEILQVNIN TVDETMLNSF TIKIGIECQL SAEELAQQIQ QTFC
Arabidopsis Description
SPCHSPCH [Source:UniProtKB/TrEMBL;Acc:A0A178UF96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.