Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G302700.1 | Wheat | nucleus | 66.57 | 70.65 |
| TraesCS4B01G304500.1 | Wheat | nucleus | 65.96 | 70.23 |
| TraesCS4A01G404700.1 | Wheat | nucleus | 65.96 | 70.0 |
| Zm00001d027987_P001 | Maize | nucleus | 66.87 | 66.47 |
| EER95359 | Sorghum | nucleus | 71.12 | 65.55 |
| Zm00001d048229_P001 | Maize | nucleus | 69.3 | 63.87 |
| GSMUA_Achr10P... | Banana | mitochondrion | 36.17 | 60.1 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 52.89 | 59.79 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 42.86 | 58.26 |
| Os10t0376900-01 | Rice | nucleus | 54.1 | 54.27 |
| Os02t0759000-01 | Rice | cytosol | 23.1 | 50.0 |
| HORVU4Hr1G078270.2 | Barley | plastid | 65.65 | 48.87 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 46.81 | 47.83 |
| Solyc11g010340.1.1 | Tomato | nucleus | 42.86 | 47.32 |
| Os08t0483900-01 | Rice | nucleus | 50.15 | 45.45 |
| Os09t0468700-00 | Rice | nucleus | 47.72 | 44.73 |
| PGSC0003DMT400041644 | Potato | nucleus | 30.7 | 42.62 |
| CDY37820 | Canola | nucleus | 25.23 | 38.07 |
| Bra031865.1-P | Field mustard | nucleus | 24.92 | 37.61 |
| Os05t0597000-00 | Rice | nucleus | 24.92 | 36.12 |
| Os02t0691500-01 | Rice | nucleus | 39.51 | 34.85 |
| AT5G65320.1 | Thale cress | nucleus | 31.0 | 34.46 |
| CDY33966 | Canola | nucleus | 31.31 | 34.11 |
| Os03t0122100-00 | Rice | mitochondrion, nucleus, plastid | 28.88 | 30.55 |
| Os05t0586300-00 | Rice | nucleus | 33.43 | 28.42 |
| Os02t0257500-00 | Rice | nucleus | 24.62 | 19.52 |
| Os06t0526100-01 | Rice | cytosol, endoplasmic reticulum, nucleus | 23.4 | 19.49 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4331887 | ProteinID:AAN64142.1 | ProteinID:ABF94380.1 | EMBL:AK107555 |
| ProteinID:BAF11131.1 | ProteinID:BAS82697.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EMBL:HQ858866 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os03g0188400 |
| EnsemblPlants:Os03t0188400-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF24 | UniProt:Q8H7N8 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000AD2CB | RefSeq:XP_015629273.1 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix protein 044Helix-loop-helix DNA-binding domain containing protein. (Os03t0188400-01)
Coordinates
chr3:+:4628935..4630514
Molecular Weight (calculated)
35264.7 Da
IEP (calculated)
5.742
GRAVY (calculated)
-0.244
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGGG FGEFYGVDEW DDQLQVASVD EWEVASKDNS DASTEGKAAA AERAEPVAAG RRKRRRTKVV
101: KNKEEIECQR MTHIAVERNR RRQMNEYLAV LRSLMPASYS QRGDQASIVG GAINYVKELE QLLQSLEVQK SLKNRSGAMD AAGDSPFAGF FSFPQYSTSP
201: RTGCSAAASA GSSGSASSVV MDDTAGSAES GRQSAAIADI EVTMVEGHAS LKVLARRRPK QLLKLVVGLQ QLRIPPLHLN VTTVDAMVLY SFSLKVEDDS
301: KLGSVEDIAT AVHQILGSIQ QQEAVLSIS
101: KNKEEIECQR MTHIAVERNR RRQMNEYLAV LRSLMPASYS QRGDQASIVG GAINYVKELE QLLQSLEVQK SLKNRSGAMD AAGDSPFAGF FSFPQYSTSP
201: RTGCSAAASA GSSGSASSVV MDDTAGSAES GRQSAAIADI EVTMVEGHAS LKVLARRRPK QLLKLVVGLQ QLRIPPLHLN VTTVDAMVLY SFSLKVEDDS
301: KLGSVEDIAT AVHQILGSIQ QQEAVLSIS
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.