Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | mitochondrion | 50.83 | 62.12 |
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 47.11 | 61.29 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 47.93 | 58.29 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 65.29 | 54.3 |
| GSMUA_Achr11P... | Banana | mitochondrion | 40.08 | 51.32 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 53.31 | 45.74 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 53.31 | 44.95 |
| TraesCS4D01G302700.1 | Wheat | nucleus | 57.02 | 44.52 |
| TraesCS4A01G404700.1 | Wheat | nucleus | 57.02 | 44.52 |
| TraesCS4B01G304500.1 | Wheat | nucleus | 56.61 | 44.34 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 52.89 | 43.24 |
| GSMUA_Achr10P... | Banana | nucleus | 54.96 | 43.04 |
| Os03t0188400-01 | Rice | nucleus | 58.26 | 42.86 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 35.12 | 42.71 |
| Solyc11g010340.1.1 | Tomato | nucleus | 50.41 | 40.94 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 57.85 | 40.58 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 53.72 | 40.37 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 54.55 | 40.37 |
| Os10t0376900-01 | Rice | nucleus | 53.31 | 39.33 |
| Zm00001d027987_P001 | Maize | nucleus | 53.72 | 39.27 |
| OQU91887 | Sorghum | nucleus | 52.07 | 38.89 |
| EER95359 | Sorghum | nucleus | 55.79 | 37.82 |
| GSMUA_Achr11P... | Banana | nucleus | 46.28 | 37.33 |
| Zm00001d048229_P001 | Maize | nucleus | 54.55 | 36.97 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 28.93 | 36.46 |
| PGSC0003DMT400041644 | Potato | nucleus | 35.12 | 35.87 |
| CDY37820 | Canola | nucleus | 32.23 | 35.78 |
| Bra031865.1-P | Field mustard | nucleus | 32.23 | 35.78 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 28.93 | 35.35 |
| CDY33966 | Canola | nucleus | 39.26 | 31.46 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 37.6 | 31.16 |
| AT5G65320.1 | Thale cress | nucleus | 38.02 | 31.08 |
| HORVU4Hr1G078270.2 | Barley | plastid | 55.37 | 30.32 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 39.67 | 30.09 |
| GSMUA_Achr11P... | Banana | nucleus | 35.12 | 29.82 |
| GSMUA_Achr11P... | Banana | nucleus | 38.84 | 28.48 |
| GSMUA_Achr10P... | Banana | nucleus | 28.93 | 26.82 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 30.58 | 26.15 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 39.26 | 25.96 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 31.41 | 24.44 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P22310_001 | EnsemblPlants:GSMUA_Achr2T22310_001 | EnsemblPlantsGene:GSMUA_Achr2G22310_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294F592 | UniProt:M0SA72 | MapMan:15.5.32 | : |
Description
Transcription factor bHLH96 [Source:GMGC_GENE;Acc:GSMUA_Achr2G22310_001]
Coordinates
chr2:-:21425310..21426277
Molecular Weight (calculated)
27403.9 Da
IEP (calculated)
8.741
GRAVY (calculated)
-0.404
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDKGAVQE CDPSCSSAQN LHGGVGEAME VAGRRKRRCG RSIKNREEVE SQRMAHIAVE RNRRRQMNEY LAVLRSLMPS FYVQRGDQAS IVAGAINYVK
101: ELEQLLRSME VEKRLKRRTD AAAVASAFAG FFSFPHHSGA FYRNTGEIEN QTATANIEVT MLESHANLKL LSRRRPRQLL RLVAGLQSLR LVPLHLNVTS
201: VDRIVMYSFS LKVEDDCRCT SADEIAEAIH RMLIRIEEEA NL
101: ELEQLLRSME VEKRLKRRTD AAAVASAFAG FFSFPHHSGA FYRNTGEIEN QTATANIEVT MLESHANLKL LSRRRPRQLL RLVAGLQSLR LVPLHLNVTS
201: VDRIVMYSFS LKVEDDCRCT SADEIAEAIH RMLIRIEEEA NL
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.