Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 43.21 | 66.67 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 43.55 | 62.81 |
| GSMUA_Achr10P... | Banana | mitochondrion | 37.63 | 54.55 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 44.95 | 53.31 |
| GSMUA_Achr11P... | Banana | mitochondrion | 34.84 | 52.91 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 51.92 | 51.2 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 47.74 | 48.58 |
| GSMUA_Achr10P... | Banana | nucleus | 50.17 | 46.6 |
| Solyc11g010340.1.1 | Tomato | nucleus | 48.08 | 46.31 |
| Os02t0759000-01 | Rice | cytosol | 23.69 | 44.74 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 50.17 | 44.72 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 51.92 | 43.19 |
| PGSC0003DMT400041644 | Potato | nucleus | 35.54 | 43.04 |
| TraesCS6A01G315700.1 | Wheat | nucleus | 45.64 | 42.67 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 48.08 | 42.2 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 43.21 | 41.89 |
| Zm00001d005939_P001 | Maize | nucleus | 48.08 | 41.44 |
| GSMUA_Achr11P... | Banana | nucleus | 43.21 | 41.33 |
| TraesCS6B01G346100.1 | Wheat | nucleus | 45.64 | 41.07 |
| EER96894 | Sorghum | nucleus | 48.08 | 40.83 |
| Zm00001d020790_P001 | Maize | nucleus | 47.04 | 40.66 |
| TraesCS6D01G294900.1 | Wheat | nucleus | 44.95 | 40.44 |
| TraesCS5D01G255100.1 | Wheat | nucleus | 47.04 | 40.18 |
| TraesCS5B01G245900.1 | Wheat | nucleus | 48.08 | 40.12 |
| TraesCS5A01G248200.1 | Wheat | nucleus | 48.08 | 40.0 |
| Os09t0468700-00 | Rice | nucleus | 48.78 | 39.89 |
| Zm00001d052192_P001 | Maize | nucleus | 47.74 | 39.71 |
| KXG30709 | Sorghum | nucleus | 47.39 | 38.86 |
| Zm00001d018119_P001 | Maize | nucleus | 47.04 | 38.35 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 25.78 | 37.19 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 24.04 | 35.94 |
| CDY37820 | Canola | nucleus | 27.18 | 35.78 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 24.04 | 34.85 |
| Bra031865.1-P | Field mustard | nucleus | 26.13 | 34.4 |
| AT5G65320.1 | Thale cress | nucleus | 34.15 | 33.11 |
| CDY33966 | Canola | nucleus | 34.49 | 32.78 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 32.75 | 32.19 |
| GSMUA_Achr11P... | Banana | nucleus | 29.27 | 29.47 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 32.06 | 28.84 |
| HORVU5Hr1G070000.3 | Barley | nucleus, plastid | 47.04 | 28.6 |
| GSMUA_Achr11P... | Banana | nucleus | 31.36 | 27.27 |
| GSMUA_Achr10P... | Banana | nucleus | 24.04 | 26.44 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 33.1 | 25.96 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 25.44 | 25.8 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 26.83 | 24.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P05450_001 | EnsemblPlants:GSMUA_Achr5T05450_001 | EnsemblPlantsGene:GSMUA_Achr5G05450_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029679CA | UniProt:M0SVX4 | MapMan:15.5.32 | : |
Description
Putative Transcription factor bHLH96 [Source:GMGC_GENE;Acc:GSMUA_Achr5G05450_001]
Coordinates
chr5:+:4059181..4060226
Molecular Weight (calculated)
31273.9 Da
IEP (calculated)
6.603
GRAVY (calculated)
-0.367
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEAVVFQH DLPGVAMKEL YDVGGAAPGY GFGGERGRHG RWSTCCSSPV QNFDDWDVDS PPTPGAAAAL REETAGTGEA VGRSKRQRTK RVKSEEEVEN
101: QRMTHIAVER NRRKQMNEYL AVLRSLMPAS HSQRGDQAST VEGAINFVRE LEQLVHSLEA RKRVKQRSKA SPFSAFFTFP QYSSASSPCT NTESSGAAAD
201: VEVIVIESHA NVKIFSRRRA GQLLKLVGGM QSLRLTALHL NVTAVDEMVL YCLSVKVEDG CQLTSVDEIA TAIHGILAEI EEEAGHG
101: QRMTHIAVER NRRKQMNEYL AVLRSLMPAS HSQRGDQAST VEGAINFVRE LEQLVHSLEA RKRVKQRSKA SPFSAFFTFP QYSSASSPCT NTESSGAAAD
201: VEVIVIESHA NVKIFSRRRA GQLLKLVGGM QSLRLTALHL NVTAVDEMVL YCLSVKVEDG CQLTSVDEIA TAIHGILAEI EEEAGHG
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.