Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 42.07 | 69.89 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 73.46 | 65.8 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 42.07 | 65.33 |
| GSMUA_Achr5P17900_001 | Banana | nucleus | 57.93 | 63.48 |
| GSMUA_Achr10P... | Banana | mitochondrion | 37.22 | 58.08 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 53.07 | 56.36 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 43.04 | 54.96 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 57.28 | 54.13 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.01 | 53.97 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 53.4 | 51.24 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 46.6 | 50.17 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 46.93 | 48.99 |
| Solyc11g010340.1.1 | Tomato | nucleus | 46.6 | 48.32 |
| GSMUA_Achr11P... | Banana | nucleus | 44.66 | 46.0 |
| PGSC0003DMT400041644 | Potato | nucleus | 33.66 | 43.88 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 25.57 | 39.7 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 22.98 | 36.98 |
| CDY37820 | Canola | nucleus | 25.89 | 36.7 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 22.98 | 35.86 |
| Bra031865.1-P | Field mustard | nucleus | 25.24 | 35.78 |
| AT5G65320.1 | Thale cress | nucleus | 33.66 | 35.14 |
| CDY33966 | Canola | nucleus | 34.3 | 35.1 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 31.07 | 32.88 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 32.69 | 31.66 |
| GSMUA_Achr11P... | Banana | nucleus | 29.13 | 31.58 |
| GSMUA_Achr10P... | Banana | nucleus | 25.24 | 29.89 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 26.54 | 28.98 |
| GSMUA_Achr11P... | Banana | nucleus | 30.74 | 28.79 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 28.48 | 28.3 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 31.39 | 26.5 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P30300_001 | EnsemblPlants:GSMUA_Achr10T30300_001 | EnsemblPlantsGene:GSMUA_Achr10G30300_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296A4DB | UniProt:M0RMQ4 | MapMan:15.5.32 | : |
Description
helix-loop-helix DNA-binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G30300_001]
Coordinates
chr10:+:32528957..32530403
Molecular Weight (calculated)
33899.1 Da
IEP (calculated)
6.713
GRAVY (calculated)
-0.498
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVFSR DLHGCTMKER YNVGGAAWCR AFAEQKGMES ECEVGSGKHG SLDAPCTSLT PKTDARGANT PPPGTAAKDG TDGTAGHEAP AGRRKRRRTK
101: TFKNQEEVEN QRMTHIAVER NRRKQMNEYL GALRCLMPAS YVQRGDQASI IGGAINFVKE LEQLVQSLEA RKRIEQTADA APFADFFTFP QYSTTASRGA
201: NNGPAGEEAQ ENRPALADIE VTMVETHANL KVLSRRRPKQ LLKMVAGLHD LRLTILHLNV TTVAEMAFCS FSLKVEDDCQ LSSVDDIATA VHELVGTIQE
301: EADRDTTTF
101: TFKNQEEVEN QRMTHIAVER NRRKQMNEYL GALRCLMPAS YVQRGDQASI IGGAINFVKE LEQLVQSLEA RKRIEQTADA APFADFFTFP QYSTTASRGA
201: NNGPAGEEAQ ENRPALADIE VTMVETHANL KVLSRRRPKQ LLKMVAGLHD LRLTILHLNV TTVAEMAFCS FSLKVEDDCQ LSSVDDIATA VHELVGTIQE
301: EADRDTTTF
001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.