Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 43.62 | 66.13 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 43.62 | 61.81 |
| GSMUA_Achr10P... | Banana | nucleus | 63.48 | 57.93 |
| GSMUA_Achr7P12790_001 | Banana | nucleus | 66.31 | 57.19 |
| GSMUA_Achr10P... | Banana | mitochondrion | 38.65 | 55.05 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 66.31 | 54.2 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 55.32 | 53.61 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 45.74 | 53.31 |
| GSMUA_Achr11P... | Banana | mitochondrion | 35.11 | 52.38 |
| Solyc11g010340.1.1 | Tomato | nucleus | 52.48 | 49.66 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 55.67 | 48.76 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 48.58 | 47.74 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 48.58 | 46.28 |
| PGSC0003DMT400041644 | Potato | nucleus | 37.59 | 44.73 |
| GSMUA_Achr11P... | Banana | nucleus | 46.1 | 43.33 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 26.24 | 38.54 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 26.95 | 38.38 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 26.6 | 37.69 |
| CDY37820 | Canola | nucleus | 29.08 | 37.61 |
| Bra031865.1-P | Field mustard | nucleus | 28.37 | 36.7 |
| AT5G65320.1 | Thale cress | nucleus | 37.23 | 35.47 |
| CDY33966 | Canola | nucleus | 37.59 | 35.1 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 35.11 | 33.9 |
| GSMUA_Achr11P... | Banana | nucleus | 31.56 | 31.23 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 34.75 | 30.72 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 29.43 | 29.33 |
| GSMUA_Achr10P... | Banana | nucleus | 26.95 | 29.12 |
| GSMUA_Achr11P... | Banana | nucleus | 33.33 | 28.48 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 30.85 | 27.97 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 34.75 | 26.78 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P17900_001 | EnsemblPlants:GSMUA_Achr5T17900_001 | EnsemblPlantsGene:GSMUA_Achr5G17900_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002960CCE | UniProt:M0SZG9 | MapMan:15.5.32 | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G17900_001]
Coordinates
chr5:-:19093185..19094393
Molecular Weight (calculated)
31459.0 Da
IEP (calculated)
8.231
GRAVY (calculated)
-0.272
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQAVVFQQ DLFGCNMREM HIKGGEIRGV LSQCDVSGAQ GGRNLSLPEM GTDSASVVCT GTAAGRRKRR RTRSCKNQEE VENQRMTHIA VERNRRKQMN
101: QYLAVLRSLI PASYLHRGDQ ASVIGGAINF VKELEQLVQS LEARKRIKQR SNSAPFANFF TFPQYSTRNA DEAAAEQQSP VADIEVTMVE SHANLKVLAQ
201: RRPKQLLKMV VGLHLLHLTT LHLNVTTIDA MVLYSFSLKM EDECHFTCVD EIAAEVHQMV GKIQEEAASD SAVCLCSNHN IM
101: QYLAVLRSLI PASYLHRGDQ ASVIGGAINF VKELEQLVQS LEARKRIKQR SNSAPFANFF TFPQYSTRNA DEAAAEQQSP VADIEVTMVE SHANLKVLAQ
201: RRPKQLLKMV VGLHLLHLTT LHLNVTTIDA MVLYSFSLKM EDECHFTCVD EIAAEVHQMV GKIQEEAASD SAVCLCSNHN IM
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.