Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P17900_001 | Banana | nucleus | 57.19 | 66.31 |
| GSMUA_Achr3P06660_001 | Banana | mitochondrion, nucleus | 37.61 | 66.13 |
| GSMUA_Achr9P15000_001 | Banana | mitochondrion | 37.31 | 61.31 |
| GSMUA_Achr10P... | Banana | nucleus | 54.13 | 57.28 |
| GSMUA_Achr10P... | Banana | mitochondrion | 34.25 | 56.57 |
| GSMUA_Achr6P02150_001 | Banana | nucleus | 58.1 | 55.07 |
| GSMUA_Achr2P22310_001 | Banana | nucleus | 40.37 | 54.55 |
| GSMUA_Achr6P10290_001 | Banana | nucleus | 48.01 | 53.95 |
| GSMUA_Achr11P... | Banana | mitochondrion | 29.66 | 51.32 |
| GSMUA_Achr5P05450_001 | Banana | nucleus | 42.2 | 48.08 |
| VIT_07s0191g00240.t01 | Wine grape | nucleus | 46.48 | 47.2 |
| Solyc11g010340.1.1 | Tomato | nucleus | 42.51 | 46.64 |
| GSMUA_Achr8P17650_001 | Banana | nucleus | 40.98 | 45.27 |
| PGSC0003DMT400041644 | Potato | nucleus | 31.19 | 43.04 |
| GSMUA_Achr11P... | Banana | nucleus | 37.61 | 41.0 |
| GSMUA_Achr8P28400_001 | Banana | nucleus | 23.85 | 39.2 |
| GSMUA_Achr7P21110_001 | Banana | nucleus | 22.63 | 38.54 |
| GSMUA_Achr7P21190_001 | Banana | nucleus | 22.94 | 37.88 |
| CDY37820 | Canola | nucleus | 24.46 | 36.7 |
| Bra031865.1-P | Field mustard | nucleus | 24.16 | 36.24 |
| AT5G65320.1 | Thale cress | nucleus | 32.42 | 35.81 |
| CDY33966 | Canola | nucleus | 31.8 | 34.44 |
| GSMUA_Achr5P20300_001 | Banana | nucleus | 29.97 | 33.56 |
| GSMUA_Achr11P... | Banana | nucleus | 27.22 | 31.23 |
| GSMUA_Achr10P... | Banana | nucleus | 24.46 | 30.65 |
| GSMUA_Achr5P06780_001 | Banana | cytosol | 25.69 | 29.68 |
| GSMUA_Achr2P06030_001 | Banana | nucleus | 28.75 | 29.47 |
| GSMUA_Achr11P... | Banana | nucleus | 29.66 | 29.39 |
| GSMUA_Achr8P19870_001 | Banana | cytosol, golgi, nucleus | 27.22 | 28.62 |
| GSMUA_Achr8P12330_001 | Banana | golgi, vacuole | 29.05 | 25.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P12790_001 | EnsemblPlants:GSMUA_Achr7T12790_001 | EnsemblPlantsGene:GSMUA_Achr7G12790_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR11969 | PANTHER:PTHR11969:SF26 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002969B81 | UniProt:M0TH16 | MapMan:15.5.32 | : | : |
Description
helix-loop-helix DNA-binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G12790_001]
Coordinates
chr7:-:10305700..10307575
Molecular Weight (calculated)
35925.4 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.396
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEAVVFPQ DLFGCDVREL HKKGGEVWRY DFGGVAEDGK VCGSAGDQDG RGLKQERKVE DVTRGPWDTS SSSIVQASAD GHVNSSSPET GTEDAFNVSP
101: GLAARRRKKR RLKSFKNQEE VENQRMAHIA VERNRRKQIN EYLAVLRSLM PASYVQRGDQ ASIVGGAIDF VKQLEKFVHS LEAHKRVKQR SSSSPSPFAD
201: FFSFPQYSSN SPCCAKSAAD DSAGEPAVEN HSPVVAEVEV TMVETHANLK VLSTRRPKQL QNMVVGLQSL HLTTLHLNVT TIADMVLYSF SLKVEDECLL
301: TSADEIATAV HQMVAKIQQD AAFDCAV
101: GLAARRRKKR RLKSFKNQEE VENQRMAHIA VERNRRKQIN EYLAVLRSLM PASYVQRGDQ ASIVGGAIDF VKQLEKFVHS LEAHKRVKQR SSSSPSPFAD
201: FFSFPQYSSN SPCCAKSAAD DSAGEPAVEN HSPVVAEVEV TMVETHANLK VLSTRRPKQL QNMVVGLQSL HLTTLHLNVT TIADMVLYSF SLKVEDECLL
301: TSADEIATAV HQMVAKIQQD AAFDCAV
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
Arabidopsis Description
BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.