Factsheet for GSMUA_Achr2P06030_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...	nucleus
GSMUA_Achr11P...
GSMUA_Achr11P...	nucleus
GSMUA_Achr1P03660_001
GSMUA_Achr1P21280_001
GSMUA_Achr1P26300_001	nucleus
GSMUA_Achr3P29310_001
GSMUA_Achr4P03660_001
GSMUA_Achr4P17120_001
GSMUA_Achr5P14780_001
GSMUA_Achr6P30610_001
GSMUA_Achr7P03930_001	nucleus
GSMUA_Achr7P07280_001
GSMUA_Achr8P19330_001
GSMUA_Achr8P34120_001	nucleus
GSMUA_Achr9P21560_001
GSMUA_AchrUn_...	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	GSMUA_Achr8P19330_001	AT1G19980.1	21798944
AT3G24140.1	GSMUA_Achr1P03660_001	AT1G62990.1	21798944
AT3G24140.1	GSMUA_Achr3P29310_001	AT2G30590.1	21798944
AT3G24140.1	GSMUA_Achr4P03660_001	AT2G30590.1	21798944
AT3G24140.1	GSMUA_Achr9P21560_001	AT2G30590.1	21798944
AT3G24140.1	GSMUA_Achr11P...	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr1P21280_001	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr6P30610_001	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr7P07280_001	AT3G25710.1	21798944
AT3G24140.1	GSMUA_Achr4P17120_001	AT4G02770.1	21798944
AT3G24140.1	GSMUA_Achr5P14780_001	AT4G02770.1	21798944
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	17088607
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	17088607
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	21798944
AT3G24140.1	GSMUA_Achr11P...	AT5G46690.1	21798944
AT3G24140.1	GSMUA_Achr1P26300_001	AT5G65640.1	17088607
AT3G24140.1	GSMUA_Achr7P03930_001	AT5G65640.1	17088607
AT3G24140.1	GSMUA_Achr8P34120_001	AT5G65640.1	17088607
AT3G24140.1	GSMUA_AchrUn_...	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28400_001	Banana	nucleus	51.1	81.91
Solyc09g091760.1.1	Tomato	nucleus	46.08	59.51
VIT_05s0029g00050.t01	Wine grape	nucleus	73.35	58.94
Os05t0586300-00	Rice	nucleus	64.58	53.23
PGSC0003DMT400076223	Potato	nucleus	45.77	51.23
Solyc05g053660.1.1	Tomato	nucleus	61.44	51.17
KRH75571	Soybean	nucleus	68.34	50.82
PGSC0003DMT400040761	Potato	nucleus	62.07	50.77
Bra028357.1-P	Field mustard	nucleus	63.01	50.25
Bra001929.1-P	Field mustard	nucleus	63.01	49.63
CDX92996	Canola	nucleus	63.01	49.63
CDX94841	Canola	nucleus	62.38	48.77
CDX85167	Canola	nucleus	59.25	48.59
KRH71094	Soybean	nucleus	67.71	48.43
AT3G24140.1	Thale cress	nucleus	62.7	48.31
GSMUA_Achr11P...	Banana	mitochondrion	28.53	48.15
Zm00001d009715_P001	Maize	nucleus	62.38	47.61
TraesCS1D01G289400.1	Wheat	nucleus	62.38	47.49
TraesCS1B01G300100.1	Wheat	nucleus	62.07	47.48
TraesCS1A01G290800.1	Wheat	nucleus	62.07	47.14
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	26.96	46.24
CDX77460	Canola	nucleus	51.41	46.07
GSMUA_Achr7P21110_001	Banana	nucleus	27.27	45.31
KXG22636	Sorghum	nucleus	64.58	45.08
GSMUA_Achr9P15000_001	Banana	mitochondrion	27.9	44.72
HORVU1Hr1G071330.3	Barley	nucleus	60.5	44.27
GSMUA_Achr7P21190_001	Banana	nucleus	27.27	43.94
Bra028351.1-P	Field mustard	nucleus	49.53	43.89
GSMUA_Achr10P...	Banana	mitochondrion	26.65	42.93
CDY64587	Canola	nucleus	47.96	41.24
CDY18083	Canola	nucleus	49.53	41.15
GSMUA_Achr2P22310_001	Banana	nucleus	30.09	39.67
GSMUA_Achr11P...	Banana	nucleus	34.17	36.33
GSMUA_Achr5P17900_001	Banana	nucleus	30.72	34.75
GSMUA_Achr6P10290_001	Banana	nucleus	31.03	34.02
GSMUA_Achr10P...	Banana	nucleus	31.66	32.69
GSMUA_Achr11P...	Banana	nucleus	29.15	32.63
GSMUA_Achr10P...	Banana	nucleus	26.65	32.57
GSMUA_Achr5P06780_001	Banana	cytosol	28.53	32.16
GSMUA_Achr8P17650_001	Banana	nucleus	29.78	32.09
GSMUA_Achr5P05450_001	Banana	nucleus	28.84	32.06
GSMUA_Achr5P20300_001	Banana	nucleus	28.84	31.51
GSMUA_Achr8P19870_001	Banana	cytosol, golgi, nucleus	30.09	30.87
GSMUA_Achr6P02150_001	Banana	nucleus	32.29	29.86
GSMUA_Achr11P...	Banana	nucleus	29.78	28.79
GSMUA_Achr7P12790_001	Banana	nucleus	29.47	28.75
GSMUA_Achr8P12330_001	Banana	golgi, vacuole	28.21	24.59

Protein Annotations

EnsemblPlants:GSMUA_Achr2P06030_001	EnsemblPlants:GSMUA_Achr2T06030_001	EnsemblPlantsGene:GSMUA_Achr2G06030_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002957E65	UniProt:M0S5J4	MapMan:15.5.32	:	:

Description

Transcription factor FAMA [Source:GMGC_GENE;Acc:GSMUA_Achr2G06030_001]

Coordinates

chr2:-:10958298..10959546

Molecular Weight (calculated)

35385.5 Da

IEP (calculated)

7.602

GRAVY (calculated)

-0.386

Length

319 amino acids

Sequence
(BLAST)

001: MVNYMLSNPA PQTQISLDKL SFADVMQFAE LGPKLALHQS RAFGGTSLEN KAGMVAEEDG EKKARSSENA SSVQHLHLVG ETEKAAAGVV EAKNRRKRPR
101: ALKTSEEVES QRMTHIAVER NRRRQMNEHL RVLRSLMPGS YVQRGDQASI IGGAIEFVRE LEQLLQCLES QKRRRLFGGG EAPRPAMDAP PLPNQQPFYP
201: PLPFPNADQV KILDIDPSGG GLREETAENK SCLADVEVRL LGFDAMIKIL SRRRPGQLIK TIAALEDLQF AILHTNITTI EQTVLYSFNV KIASETRCTA
301: EDIANSVQQI LSFIDANTV

Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.