Factsheet for Bra001929.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003829.1-P
Bra012201.1-P
Bra015965.1-P
Bra016482.1-P
Bra017533.1-P	nucleus
Bra018303.1-P
Bra021652.1-P
Bra022808.1-P
Bra024404.1-P	nucleus
Bra025007.1-P	nucleus
Bra025069.1-P
Bra025158.1-P
Bra026510.1-P
Bra027006.1-P
Bra031852.1-P	nucleus
Bra036240.1-P
Bra036636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	Bra012201.1-P	AT1G19980.1	21798944
AT3G24140.1	Bra016482.1-P	AT1G19980.1	21798944
AT3G24140.1	Bra027006.1-P	AT1G62990.1	21798944
AT3G24140.1	Bra036636.1-P	AT1G62990.1	21798944
AT3G24140.1	Bra003829.1-P	AT1G73790.1	21798944
AT3G24140.1	Bra015965.1-P	AT1G73790.1	21798944
AT3G24140.1	Bra018303.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra021652.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra022808.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra025158.1-P	AT3G25710.1	21798944
AT3G24140.1	Bra026510.1-P	AT3G25710.1	21798944
AT3G24140.1	Bra036240.1-P	AT4G02770.1	21798944
AT3G24140.1	Bra025069.1-P	AT5G45600.1	21798944
AT3G24140.1	Bra017533.1-P	AT5G46690.1	17088607
AT3G24140.1	Bra025007.1-P	AT5G46690.1	17088607
AT3G24140.1	Bra017533.1-P	AT5G46690.1	21798944
AT3G24140.1	Bra025007.1-P	AT5G46690.1	21798944
AT3G24140.1	Bra024404.1-P	AT5G65640.1	17088607
AT3G24140.1	Bra031852.1-P	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94841	Canola	nucleus	97.53	96.81
Bra028357.1-P	Field mustard	nucleus	90.62	91.75
AT3G24140.1	Thale cress	nucleus	90.86	88.89
Bra028351.1-P	Field mustard	nucleus	65.19	73.33
GSMUA_Achr8P28400_001	Banana	nucleus	33.83	68.84
GSMUA_Achr2P06030_001	Banana	nucleus	49.63	63.01
VIT_05s0029g00050.t01	Wine grape	nucleus	61.73	62.97
Solyc05g053660.1.1	Tomato	nucleus	57.53	60.84
PGSC0003DMT400040761	Potato	nucleus	57.78	60.0
KRH75571	Soybean	nucleus	62.22	58.74
KRH71094	Soybean	nucleus	62.22	56.5
Os05t0586300-00	Rice	nucleus	46.91	49.1
TraesCS1D01G289400.1	Wheat	nucleus	48.15	46.54
TraesCS1B01G300100.1	Wheat	nucleus	47.9	46.52
TraesCS1A01G290800.1	Wheat	nucleus	47.65	45.95
Zm00001d009715_P001	Maize	nucleus	47.16	45.69
HORVU1Hr1G071330.3	Barley	nucleus	47.16	43.81
KXG22636	Sorghum	nucleus	47.9	42.45
Bra020775.1-P	Field mustard	nucleus	20.74	41.79
Bra001183.1-P	Field mustard	nucleus	20.99	41.06
Bra040234.1-P	Field mustard	nucleus	20.25	40.8
Bra040856.1-P	Field mustard	nucleus	21.73	40.55
Bra025007.1-P	Field mustard	nucleus	22.96	33.94
Bra016377.1-P	Field mustard	nucleus	24.2	32.45
Bra037414.1-P	Field mustard	nucleus	24.44	31.83
Bra029088.1-P	Field mustard	nucleus	25.93	31.25
Bra012329.1-P	Field mustard	nucleus	23.21	31.02
Bra017533.1-P	Field mustard	nucleus	21.98	30.8
Bra004505.1-P	Field mustard	nucleus	20.49	30.63
Bra007644.1-P	Field mustard	nucleus	20.99	30.47
Bra016080.1-P	Field mustard	nucleus	24.44	30.46
Bra003886.1-P	Field mustard	nucleus	23.95	29.94
Bra027958.1-P	Field mustard	nucleus	21.48	29.79
Bra008017.1-P	Field mustard	nucleus	23.7	29.45
Bra031865.1-P	Field mustard	nucleus	15.56	28.9
Bra022638.1-P	Field mustard	nucleus	24.94	28.86
Bra040483.1-P	Field mustard	nucleus	21.73	27.67
Bra003073.1-P	Field mustard	nucleus	26.42	24.71

Protein Annotations

EnsemblPlants:Bra001929.1	EnsemblPlants:Bra001929.1-P	EnsemblPlantsGene:Bra001929	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025407B3	UniProt:M4CCJ9	MapMan:15.5.32	:	:

Description

AT3G24140 (E=4e-146) FMA | FMA (FAMA); DNA binding / transcription activator/ transcription factor

Coordinates

chrA03:-:19409888..19411772

Molecular Weight (calculated)

45517.5 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.709

Length

405 amino acids

Sequence
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NNSGMIDYMF NRNLQQQKQS MPQQHQLSPS GFGATTPTFD KMSFADVMQF ADFGPKLALN QTRNQDDQET GLDPVYFLKF
101: PVLNDKIEDH NQTHNLMSQE GGECEGNIGN VFLEEKENQE DENDNNSVQL RFIGGEEGDR ENKNDTTKEV KSKRKRARTS KTSEEVESQR MTHIAVERNR
201: RKQMNEHLRV LRSLMPGSYV QRGDQASIIG GAIEFVRELE QLLQCLESQK RRRILGETGN RQIGDMTTTM TSSSPITSVA NPLISTGNVT ELEGGGGGIR
301: EETAENKSCL ADVEVKLLGF DAMIKILSRR RPGQLIKTIA ALEDLHLSIL HTNITTMEQT VLYSFNVKAS RYKHVQITSE TRFTAEDIAS SIQEIFSFIH
401: ANTTM

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.