Factsheet for Bra022808.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra003251.1-P
Bra007269.1-P
Bra012987.1-P
Bra014671.1-P
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30590.1	Bra025315.1-P	AT3G27960.1	21798944
AT2G30590.1	Bra003251.1-P	AT3G56800.1	15733871
AT2G30590.1	Bra007269.1-P	AT3G56800.1	15733871
AT2G30590.1	Bra014671.1-P	AT3G56800.1	15733871
AT2G30590.1	Bra000638.1-P	AT4G08150.1	21798944
AT2G30590.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84824	Canola	nucleus	98.82	98.82
CDY23988	Canola	nucleus	94.97	94.41
Bra021652.1-P	Field mustard	nucleus	77.81	81.93
Bra018303.1-P	Field mustard	nucleus	76.63	77.31
AT2G30590.1	Thale cress	nucleus	81.36	72.37
Bra013779.1-P	Field mustard	nucleus	24.26	57.34
GSMUA_Achr4P03660_001	Banana	nucleus	45.27	56.67
GSMUA_Achr3P29310_001	Banana	nucleus	46.15	56.32
Bra040396.1-P	Field mustard	nucleus	44.08	49.17
Bra001117.1-P	Field mustard	nucleus	46.15	48.9
GSMUA_Achr9P21560_001	Banana	nucleus	49.11	45.48
Bra010005.1-P	Field mustard	nucleus	45.86	45.45
Bra020617.1-P	Field mustard	nucleus	45.27	45.4
Bra032084.1-P	Field mustard	nucleus	32.54	33.85
Bra011282.1-P	Field mustard	nucleus	31.66	33.23
Bra023998.1-P	Field mustard	nucleus	31.95	32.93
Bra032174.1-P	Field mustard	nucleus	30.77	32.6
Bra010231.1-P	Field mustard	nucleus	31.66	32.23
Bra019239.1-P	Field mustard	nucleus	32.84	31.9
Bra010839.1-P	Field mustard	nucleus	16.57	21.46
Bra032300.1-P	Field mustard	nucleus	16.27	20.99
Bra037368.1-P	Field mustard	nucleus	18.34	20.81
Bra007413.1-P	Field mustard	nucleus	15.68	19.63
Bra014556.1-P	Field mustard	nucleus	15.98	19.42
Bra019297.1-P	Field mustard	nucleus	15.38	17.39
Bra022612.1-P	Field mustard	nucleus	17.46	17.15
Bra013708.1-P	Field mustard	nucleus	14.79	16.89
Bra020814.1-P	Field mustard	nucleus	15.38	16.88
Bra005388.1-P	Field mustard	nucleus	18.64	15.63
Bra026228.1-P	Field mustard	nucleus	18.05	15.4
Bra021934.1-P	Field mustard	nucleus	17.75	15.15
Bra041029.1-P	Field mustard	nucleus	17.46	14.5

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra022808	EnsemblPlants:Bra022808.1	EnsemblPlants:Bra022808.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4E208	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF12
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002540244	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom
SEG:seg	:	:	:	:	:

Description

AT2G30590 (E=1e-076) WRKY21 | WRKY21; calmodulin binding / transcription factor

Coordinates

chrA03:+:7165815..7167014

Molecular Weight (calculated)

38060.2 Da

IEP (calculated)

10.359

GRAVY (calculated)

-0.744

Length

338 amino acids

Sequence
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLSSRPHQQD HLYDMSLLSE TREAVFRFKR VANLLSSSSV GHARFRRAKR PQTHLSQTIF LDPCLQRTEL TSSQKPPVVL
101: RSDLSLGPVD SLTLGTRSFG LNSNAKAPLL QLNQQQQQQL HERLQAHQQH QQRHQAEMML RKCNSGMSLS FDNSSCTTPT MSSTRSFISS LSIDGSVNNS
201: SSSFHLLGAP SSTDQSSQYS KRKCLMRGAD EHGSAKCGRS SRCHCSKKRK HRVRRSIRVP AISNKVADIP PDDYSWRKYG QKPIKGSPYP RGYYKCSSIR
301: GCPARKHVER CLEDPAMLIV TYEAEHNHPK MPSQTVTT

Best Arabidopsis Sequence Match ( AT3G04670.1 )
(BLAST)

001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT

Arabidopsis Description

WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.