Factsheet for Bra040396.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003251.1-P
Bra007269.1-P
Bra014671.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	Bra003251.1-P	AT3G56800.1	15733871
AT3G04670.1	Bra007269.1-P	AT3G56800.1	15733871
AT3G04670.1	Bra014671.1-P	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50747	Canola	nucleus	96.37	96.37
Bra001117.1-P	Field mustard	nucleus	86.14	81.82
AT3G04670.1	Thale cress	nucleus	87.79	80.61
Bra010005.1-P	Field mustard	nucleus	74.26	65.98
Bra020617.1-P	Field mustard	nucleus	71.29	64.09
Bra013779.1-P	Field mustard	nucleus	25.08	53.15
GSMUA_Achr10P...	Banana	nucleus	50.49	50.66
Solyc09g066010.2.1	Tomato	nucleus	55.12	50.45
VIT_07s0141g00680.t01	Wine grape	nucleus	55.12	49.12
PGSC0003DMT400038986	Potato	nucleus	55.45	48.55
Solyc06g008610.2.1	Tomato	nucleus	53.8	46.84
Bra021652.1-P	Field mustard	nucleus	48.84	46.11
KRH71315	Soybean	nucleus	53.8	45.92
PGSC0003DMT400013632	Potato	nucleus	53.47	45.63
TraesCS4B01G069500.2	Wheat	nucleus	51.16	45.59
TraesCS4D01G068200.1	Wheat	nucleus	51.16	45.45
KRH67313	Soybean	nucleus	51.16	45.45
TraesCS4A01G246000.2	Wheat	nucleus	52.15	45.27
EER91209	Sorghum	nucleus	52.15	44.89
TraesCS5B01G066400.1	Wheat	nucleus	52.48	44.79
TraesCS5D01G070700.1	Wheat	nucleus	52.48	44.66
Bra022808.1-P	Field mustard	nucleus	49.17	44.08
TraesCS5A01G059100.1	Wheat	nucleus	51.49	43.94
Bra018303.1-P	Field mustard	nucleus	48.51	43.88
Zm00001d033291_P007	Maize	nucleus	51.16	43.79
Os12t0597700-01	Rice	nucleus	50.83	42.42
EES17321	Sorghum	nucleus	51.16	41.78
Zm00001d041397_P001	Maize	nucleus	50.49	41.69
Os03t0741400-01	Rice	nucleus	52.48	41.09
Zm00001d013709_P003	Maize	nucleus	49.51	40.65
KRH32116	Soybean	extracellular	52.15	40.31
Zm00001d013307_P003	Maize	nucleus	52.15	40.0
Zm00001d033965_P001	Maize	nucleus	51.82	39.55
Zm00001d030969_P001	Maize	nucleus	48.51	39.3
EER93478	Sorghum	nucleus	52.15	38.92
HORVU4Hr1G011590.2	Barley	nucleus, plastid	51.82	38.11
TraesCS5D01G390800.1	Wheat	nucleus	48.51	37.31
HORVU5Hr1G094050.1	Barley	nucleus	48.51	37.22
TraesCS5A01G381000.1	Wheat	nucleus	48.18	36.78
TraesCS5B01G384600.1	Wheat	nucleus	48.51	36.75
Bra011282.1-P	Field mustard	nucleus	38.28	36.02
Bra032084.1-P	Field mustard	nucleus	38.61	36.0
Bra032174.1-P	Field mustard	nucleus	36.3	34.48
Bra023998.1-P	Field mustard	nucleus	36.96	34.15
Bra010231.1-P	Field mustard	nucleus	36.63	33.43
Bra019239.1-P	Field mustard	nucleus	33.66	29.31
Bra010839.1-P	Field mustard	nucleus	17.16	19.92
Bra037368.1-P	Field mustard	nucleus	19.47	19.8
Bra032300.1-P	Field mustard	nucleus	16.83	19.47
Bra007413.1-P	Field mustard	nucleus	16.17	18.15
Bra014556.1-P	Field mustard	nucleus	16.5	17.99
Bra019297.1-P	Field mustard	nucleus	17.49	17.73
Bra013708.1-P	Field mustard	nucleus	17.16	17.57
Bra020814.1-P	Field mustard	nucleus	17.49	17.21
Bra022612.1-P	Field mustard	nucleus	18.81	16.57
Bra026228.1-P	Field mustard	nucleus	20.46	15.66
Bra005388.1-P	Field mustard	nucleus	20.46	15.38
Bra041029.1-P	Field mustard	nucleus	20.13	14.99
Bra021934.1-P	Field mustard	nucleus	18.48	14.14

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra040396	EnsemblPlants:Bra040396.1	EnsemblPlants:Bra040396.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4FH18	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF12
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000253EC97	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom
SEG:seg	:	:	:	:	:

Description

AT3G04670 (E=1e-049) WRKY39, ATWRKY39 | WRKY39; calmodulin binding / transcription factor

Coordinates

chrScaffold000203:-:12865..13907

Molecular Weight (calculated)

33523.8 Da

IEP (calculated)

9.729

GRAVY (calculated)

-0.603

Length

303 amino acids

Sequence
(BLAST)

001: MEEVEAASKL AIESCHGVLT LLSQQQTSCD SKSLMVETRE VVSKLKRVAS LLTKGSGHGK FRRTNNNKFS PSFPQHIFLE SPICCGNDES SDYTQVLAPE
101: PLQMVPASDE IDPRYQLGHP LSHRWPPPFR APYQKIAYSR SNSGGVNLTF DGSASSCYTP SVSNGSRSFV SSLSMDTSVD RSSFQLTGLS RGKMCSGSLK
201: CGSRSKCHCS KKRKLRVKRS IKVPAISNKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK HVERCVDETS MLIVTYEGEH NHSRILSSQS
301: AHT

Best Arabidopsis Sequence Match ( AT3G04670.1 )
(BLAST)

001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT

Arabidopsis Description

WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.