Factsheet for Zm00001d041397_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	Zm00001d005003_P002	AT3G56800.1	15733871
AT3G04670.1	Zm00001d008278_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d010649_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d028948_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d038543_P004	AT3G56800.1	15733871
AT3G04670.1	Zm00001d038545_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d041430_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d043144_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d047597_P001	AT3G56800.1	15733871
AT3G04670.1	Zm00001d052415_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d005003_P002	AT3G56800.1	15733871
AT5G28650.1	Zm00001d008278_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d010649_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d028948_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d038543_P004	AT3G56800.1	15733871
AT5G28650.1	Zm00001d038545_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d041430_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d043144_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d047597_P001	AT3G56800.1	15733871
AT5G28650.1	Zm00001d052415_P001	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17321	Sorghum	nucleus	91.55	90.57
Zm00001d030969_P001	Maize	nucleus	81.2	79.68
Os12t0597700-01	Rice	nucleus	73.3	74.1
TraesCS5D01G070700.1	Wheat	nucleus	68.94	71.07
TraesCS5B01G066400.1	Wheat	nucleus	68.66	70.99
TraesCS5A01G059100.1	Wheat	nucleus	68.66	70.99
Zm00001d033291_P007	Maize	nucleus	60.76	62.99
GSMUA_Achr10P...	Banana	nucleus	48.77	59.27
Zm00001d013709_P003	Maize	nucleus	59.4	59.08
Solyc09g066010.2.1	Tomato	nucleus	47.68	52.87
VIT_07s0141g00680.t01	Wine grape	nucleus	47.68	51.47
PGSC0003DMT400038986	Potato	nucleus	47.68	50.58
Bra040396.1-P	Field mustard	nucleus	41.69	50.49
CDY50747	Canola	nucleus	41.14	49.84
CDY40667	Canola	nucleus	42.78	49.37
KRH71315	Soybean	nucleus	47.68	49.3
Bra001117.1-P	Field mustard	nucleus	42.78	49.22
CDX74175	Canola	nucleus	42.78	48.91
CDY41890	Canola	nucleus	41.69	48.88
Solyc06g008610.2.1	Tomato	nucleus	46.32	48.85
AT3G04670.1	Thale cress	nucleus	43.87	48.79
AT5G28650.1	Thale cress	nucleus	43.32	48.18
PGSC0003DMT400013632	Potato	nucleus	46.32	47.89
Bra010005.1-P	Field mustard	nucleus	44.41	47.8
CDX86205	Canola	nucleus	44.41	47.8
CDY48658	Canola	nucleus	43.87	47.77
CDY05601	Canola	nucleus	43.87	47.77
Bra020617.1-P	Field mustard	nucleus	43.32	47.18
CDY33884	Canola	nucleus	43.32	47.18
KRH67313	Soybean	nucleus	42.78	46.04
Zm00001d013307_P003	Maize	nucleus	47.96	44.56
Zm00001d033965_P001	Maize	nucleus	47.96	44.33
KRH32116	Soybean	extracellular	46.59	43.62
Zm00001d002405_P001	Maize	nucleus	31.34	38.59
Zm00001d026252_P001	Maize	nucleus	32.15	37.34
Zm00001d004086_P001	Maize	nucleus	31.34	34.74
Zm00001d050195_P001	Maize	nucleus	25.34	30.39
Zm00001d016457_P001	Maize	nucleus	26.43	29.85
Zm00001d024376_P001	Maize	nucleus	24.8	29.26
Zm00001d037054_P001	Maize	nucleus	14.99	21.91
Zm00001d034475_P001	Maize	cytosol	19.35	21.85
Zm00001d043569_P001	Maize	cytosol	14.99	19.16
Zm00001d012746_P001	Maize	nucleus	14.44	19.13
Zm00001d008578_P001	Maize	nucleus	16.62	17.89
Zm00001d044171_P001	Maize	nucleus	16.62	17.68
Zm00001d043474_P001	Maize	nucleus	14.71	17.65
Zm00001d053369_P001	Maize	nucleus	16.89	16.8
Zm00001d009698_P001	Maize	nucleus	15.8	16.71
Zm00001d011403_P001	Maize	nucleus	15.8	16.62
Zm00001d034888_P001	Maize	nucleus	16.89	16.32
Zm00001d016052_P001	Maize	nucleus	16.89	16.19
Zm00001d030139_P001	Maize	nucleus	15.8	13.18
Zm00001d002452_P001	Maize	nucleus	17.44	12.67
Zm00001d051550_P001	Maize	nucleus	15.53	12.23
Zm00001d017712_P001	Maize	nucleus	15.53	11.78
Zm00001d026218_P001	Maize	nucleus	12.53	10.53

Protein Annotations

EntrezGene:100191630	MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:B4F9J0	EMBL:BT033778	EMBL:BT054309
EMBL:BT084336	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	EMBL:KJ726811	ProteinID:ONM32926.1	ProteinID:ONM32927.1	PFAM:PF03106
PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF23	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI00017B6158	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	EnsemblPlantsGene:Zm00001d041397	EnsemblPlants:Zm00001d041397_P001	EnsemblPlants:Zm00001d041397_T001
InterPro:Zn-cluster-dom	SEG:seg	:	:	:	:

Description

WRKY-transcription factor 110Probable WRKY transcription factor 74

Coordinates

chr3:-:116329475..116332429

Molecular Weight (calculated)

39343.0 Da

IEP (calculated)

10.669

GRAVY (calculated)

-0.522

Length

367 amino acids

Sequence
(BLAST)

001: MEEVEVANMA AVESCHRVLA LLSQQQDPAL LKSVASETAE ACAKFRKVAA LLGSASGGGG CGHARGRFSR RVRPLGLVNQ KSPLGIATGS GNPLEMMPST
101: AAAAGSPSPP QSTSYAQMRA RLSSAPESSR GLDLACSSSR CSPHPFGAPK LVQPLSVQFQ IGSVAHRYPF HQQQSRQKLQ AEMFRRSNSG ISLKFDSPSP
201: SGGAAGTMSS ARSFMSSLSI DRSMASLDGK RPFHLVGTPV ASDPADAHRA PKRRCTGRGE DGRGKCATTG RCHCSKRRKL RIKRSIRVPA ISNKIADIPP
301: DEYSWRKYGQ KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPAMLIVT YEGEHSHTQL PAQPAQT

Best Arabidopsis Sequence Match ( AT3G04670.1 )
(BLAST)

001: MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM
101: VPASAVYNEM EPKHQLGHPS LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS NGSRSFVSSL SMDASVTDYD
201: RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
301: RCIDETSMLI VTYEGEHNHS RILSSQSAHT

Arabidopsis Description

WRKY39Probable WRKY transcription factor 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.