Factsheet for PGSC0003DMT400013632

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04670.1	PGSC0003DMT400014123	AT3G56800.1	15733871
AT3G04670.1	PGSC0003DMT400018569	AT3G56800.1	15733871
AT3G04670.1	PGSC0003DMT400046278	AT3G56800.1	15733871
AT3G04670.1	PGSC0003DMT400054299	AT3G56800.1	15733871
AT3G04670.1	PGSC0003DMT400058435	AT3G56800.1	15733871
AT3G04670.1	PGSC0003DMT400070437	AT3G56800.1	15733871
AT3G04670.1	PGSC0003DMT400097662	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400014123	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400018569	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400046278	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400054299	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400058435	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400070437	AT3G56800.1	15733871
AT5G28650.1	PGSC0003DMT400097662	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008610.2.1	Tomato	nucleus	96.62	98.56
PGSC0003DMT400038986	Potato	nucleus	76.62	78.61
VIT_07s0141g00680.t01	Wine grape	nucleus	68.17	71.18
GSMUA_Achr10P...	Banana	nucleus	48.45	56.95
Bra040396.1-P	Field mustard	nucleus	45.63	53.47
CDY50747	Canola	nucleus	45.07	52.81
Bra001117.1-P	Field mustard	nucleus	47.04	52.35
AT3G04670.1	Thale cress	nucleus	48.45	52.12
CDX74175	Canola	nucleus	46.76	51.71
CDY40667	Canola	nucleus	46.2	51.57
CDY41890	Canola	nucleus	45.07	51.12
AT5G28650.1	Thale cress	nucleus	47.04	50.61
CDY48658	Canola	nucleus	47.89	50.45
CDX86205	Canola	nucleus	47.89	49.85
Bra010005.1-P	Field mustard	nucleus	47.89	49.85
TraesCS4D01G068200.1	Wheat	nucleus	47.32	49.27
CDY05601	Canola	nucleus	46.76	49.26
TraesCS4B01G069500.2	Wheat	nucleus	47.04	49.12
Bra020617.1-P	Field mustard	nucleus	46.2	48.66
CDY33884	Canola	nucleus	46.2	48.66
TraesCS4A01G246000.2	Wheat	nucleus	47.61	48.42
Os12t0597700-01	Rice	nucleus	49.01	47.93
TraesCS5B01G066400.1	Wheat	nucleus	47.89	47.89
TraesCS5D01G070700.1	Wheat	nucleus	47.89	47.75
TraesCS5A01G059100.1	Wheat	nucleus	47.61	47.61
EER91209	Sorghum	nucleus	47.04	47.44
Zm00001d041397_P001	Maize	nucleus	47.89	46.32
EES17321	Sorghum	nucleus	48.17	46.09
Zm00001d033291_P007	Maize	nucleus	45.92	46.05
Zm00001d030969_P001	Maize	nucleus	47.04	44.65
Os03t0741400-01	Rice	nucleus	48.45	44.44
Zm00001d013709_P003	Maize	nucleus	45.92	44.17
Zm00001d013307_P003	Maize	nucleus	48.73	43.8
Zm00001d033965_P001	Maize	nucleus	48.73	43.58
EER93478	Sorghum	nucleus	47.04	41.13
HORVU4Hr1G011590.2	Barley	nucleus, plastid	47.04	40.53
TraesCS5D01G390800.1	Wheat	nucleus	44.51	40.1
HORVU5Hr1G094050.1	Barley	nucleus	44.51	40.0
TraesCS5A01G381000.1	Wheat	nucleus	43.94	39.29
TraesCS5B01G384600.1	Wheat	nucleus	43.94	39.0
PGSC0003DMT400064256	Potato	nucleus	34.65	37.96
PGSC0003DMT400020517	Potato	nucleus	35.49	35.59
PGSC0003DMT400065506	Potato	nucleus	32.39	34.43
PGSC0003DMT400075531	Potato	nucleus	29.86	33.97
PGSC0003DMT400024632	Potato	nucleus	31.27	33.23
PGSC0003DMT400027378	Potato	nucleus	13.8	23.56
PGSC0003DMT400052637	Potato	nucleus	15.77	21.88
PGSC0003DMT400023272	Potato	mitochondrion, nucleus	14.08	20.49
PGSC0003DMT400073267	Potato	nucleus	16.62	19.73
PGSC0003DMT400000215	Potato	nucleus	18.87	19.03
PGSC0003DMT400032091	Potato	nucleus	14.65	16.94
PGSC0003DMT400039061	Potato	nucleus	17.46	15.01

Protein Annotations

EntrezGene:102588457	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1A340
PFAM:PF03106	PFAM:PF10533	EnsemblPlantsGene:PGSC0003DMG400005329	PGSC:PGSC0003DMG400005329	EnsemblPlants:PGSC0003DMT400013632	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF12	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002947FC8	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_006366665.1	RefSeq:XP_015160479.1	RefSeq:XP_015160480.1	InterPro:Zn-cluster-dom	SEG:seg

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005329]

Coordinates

chr6:-:1301491..1304767

Molecular Weight (calculated)

39952.3 Da

IEP (calculated)

10.067

GRAVY (calculated)

-0.830

Length

355 amino acids

Sequence
(BLAST)

001: MEEIEEVNKA AVENCHRVIS LLSSRTHDQI SYTNLVRETG EAVHKFKKVV TLLNSTLGHA RVRKSNKFKT PLPHNILVEN PNCKIDDHAK ALRLLPIDSP
101: ENRVLEMGAN VKCNLTLGSP SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QEQQQQQQQQ QQRRFLLQQQ QQLKHPAEMM YRRSNSGVSL NFDSSTCTPT
201: MSSTRSFISS LSVDGSVANG NSFHLIGASH SADQSSFQHK RKCSGRGDEG SGKCGSSGRC HCSKKRKHRV KRSIKIPAVS NKLADIPSDE YSWRKYGQKP
301: IKGSPHPRGY YKCSSMRGCP ARKHVERCLE DASMLIVTYE GEHNHPRLPS QLANT

Best Arabidopsis Sequence Match ( AT2G30590.1 )
(BLAST)

001: MEEIEGTNRA AVESCHRVLN LLHRSQQQDH VGFEKNLVSE TREAVIRFKR VGSLLSSSVG HARFRRAKKL QSHVSQSLLL DPCQQRTTEV PSSSSQKTPV
101: LRSGFQELSL RQPSDSLTLG TRSFSLNSNA KAPLLQLNQQ TMPPSNYPTL FPVQQQQQQQ QQQQQQEQQQ QQQQQQQQFH ERLQAHHLHQ QQQLQKHQAE
201: LMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHF GVPSSTDQNS LHSKRKCPLK GDEHGSLKCG SSSRCHCAKK RKHRVRRSIR
301: VPAISNKVAD IPPDDYSWRK YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQAITT

Arabidopsis Description

WRKY21Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.