Factsheet for PGSC0003DMT400065506

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23320.1	PGSC0003DMT400014123	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400018569	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400046278	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400054299	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400058435	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400070437	AT3G56800.1	15733871
AT2G23320.1	PGSC0003DMT400097662	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064256	Potato	nucleus	69.46	71.6
KRH28430	Soybean	nucleus	59.58	61.99
VIT_07s0031g00080.t01	Wine grape	nucleus	61.38	61.01
KRH77042	Soybean	nucleus	58.38	60.75
KRH04545	Soybean	nucleus	57.19	57.53
KRH57965	Soybean	nucleus	57.48	57.48
PGSC0003DMT400020517	Potato	nucleus	55.39	52.26
CDY38936	Canola	nucleus	45.21	49.67
CDX89558	Canola	nucleus	43.71	48.99
AT2G23320.1	Thale cress	nucleus	46.11	48.58
Bra032174.1-P	Field mustard	nucleus	45.21	47.34
PGSC0003DMT400075531	Potato	nucleus	36.23	38.78
PGSC0003DMT400024632	Potato	nucleus	38.32	38.32
PGSC0003DMT400038986	Potato	nucleus	35.63	34.39
PGSC0003DMT400013632	Potato	nucleus	34.43	32.39
PGSC0003DMT400027378	Potato	nucleus	14.67	23.56
PGSC0003DMT400052637	Potato	nucleus	17.07	22.27
PGSC0003DMT400073267	Potato	nucleus	17.66	19.73
PGSC0003DMT400023272	Potato	mitochondrion, nucleus	13.77	18.85
PGSC0003DMT400000215	Potato	nucleus	18.26	17.33
PGSC0003DMT400032091	Potato	nucleus	15.57	16.94
PGSC0003DMT400039061	Potato	nucleus	19.16	15.5

Protein Annotations

EntrezGene:102588837	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CE46	PFAM:PF03106
PFAM:PF10533	EnsemblPlantsGene:PGSC0003DMG400025481	PGSC:PGSC0003DMG400025481	EnsemblPlants:PGSC0003DMT400065506	PFscan:PS50811	PANTHER:PTHR31282
PANTHER:PTHR31282:SF70	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002955BDE	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_006360211.1	InterPro:Zn-cluster-dom	SEG:seg	:	:	:

Description

WRKY domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400025481]

Coordinates

chr2:+:23360208..23362796

Molecular Weight (calculated)

37382.7 Da

IEP (calculated)

9.190

GRAVY (calculated)

-0.476

Length

334 amino acids

Sequence
(BLAST)

001: MAVELMMNYI NTPSNTNNSF TRNLEEKAVI QEAASGVESV EKLIKLLSQT QQLEQKQKQG NFTCFLNQEK SSPMEIEIVA DAAVTKFKKV ISLLGGSRTG
101: YARFRRAPIA SPLPPDHFKK DYADSKVYCP TPIQQLPPIA YEFYNKFEKQ ESVTNTINFS YPPEICCSNS FNISTITGET ESKYISNLSS VVKPPLSSSS
201: SFKIRKCTSS ENGLSGMCSG SSGRCHCSKR RKLRLKRVVR VPAISMKLSD IPPDDYSWRK YGQKPIKGSP HPRAYYKCSS VRGCPARKHV ERSLDEPTML
301: MVTYEGEHNH SLSIAETSCV ILESDQFVGN IIVN

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.