Factsheet for PGSC0003DMT400000215

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095100.2.1	Tomato	nucleus	98.01	97.18
VIT_15s0046g02190.t01	Wine grape	nucleus	54.55	55.17
Bra037368.1-P	Field mustard	nucleus	43.47	51.34
KRH40377	Soybean	nucleus	50.57	51.15
CDY07185	Canola	nucleus	42.33	51.03
CDY48511	Canola	nucleus	43.18	51.01
KRH00856	Soybean	nucleus	50.28	50.43
AT4G01250.1	Thale cress	nucleus	41.48	48.99
CDY01962	Canola	nucleus	39.49	47.77
KRH06582	Soybean	nucleus	44.6	46.87
GSMUA_Achr10P...	Banana	nucleus	35.8	42.0
GSMUA_Achr10P...	Banana	nucleus	36.36	41.97
GSMUA_Achr8P19810_001	Banana	nucleus	38.07	38.29
GSMUA_Achr7P14300_001	Banana	nucleus	30.11	34.08
PGSC0003DMT400032091	Potato	nucleus	26.14	29.97
PGSC0003DMT400027378	Potato	nucleus	15.91	26.92
PGSC0003DMT400052637	Potato	nucleus	19.32	26.56
PGSC0003DMT400073267	Potato	nucleus	22.16	26.09
GSMUA_Achr10P...	Banana	plastid	31.53	24.72
PGSC0003DMT400023272	Potato	mitochondrion, nucleus	16.76	24.18
PGSC0003DMT400039061	Potato	nucleus	26.14	22.28
PGSC0003DMT400064256	Potato	nucleus	19.32	20.99
PGSC0003DMT400024632	Potato	nucleus	19.6	20.66
PGSC0003DMT400075531	Potato	nucleus	17.9	20.19
PGSC0003DMT400038986	Potato	nucleus	19.03	19.36
PGSC0003DMT400013632	Potato	nucleus	19.03	18.87
PGSC0003DMT400020517	Potato	nucleus	18.75	18.64
PGSC0003DMT400065506	Potato	nucleus	17.33	18.26

Protein Annotations

EntrezGene:102584992	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009987	GO:GO:0010150	GO:GO:0010200	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	UniProt:M0ZGA4	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400000064	PGSC:PGSC0003DMG400000064
EnsemblPlants:PGSC0003DMT400000215	PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF35	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI0002954297	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006339631.1	SEG:seg	:

Description

WRKY transcription factor 23 [Source:PGSC_GENE;Acc:PGSC0003DMG400000064]

Coordinates

chr1:+:72708697..72710469

Molecular Weight (calculated)

38833.6 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.860

Length

352 amino acids

Sequence
(BLAST)

001: MEEDWDLHAV VRGCASSSTA AATTTATTNS CCSNFQPRQD GNFFSFQDPF VPRFDNPISD FEELHNLYKP FFPKSQQIPL SPQNNSNNIP ISPLSVLGGL
101: QDLSPQQTLK QQQHIHQLNS TRLTQPKQSP LSVYGSTTTS ASHVQSPRPK RRKNQLKKVC QVPAEGLSSD MWSWRKYGQK PIKGSPYPRG YYRCSTSKGC
201: LARKQVERNR SDPNMFIVTY TAEHNHPMPT HRNSLAGSTR QKPANSEAGT VSDSNKPTSS SPVSSPACHS PATEKQESSR DEREDIFEDD DDEFGSSNMG
301: LDNMEPADDD FFEGLDELAA QATGDCFSDN LPGSMQLPWM SNNATTTAAG GV

Best Arabidopsis Sequence Match ( AT4G01250.1 )
(BLAST)

001: MADDWDLHAV VRGCSAVSSS ATTTVYSPGV SSHTNPIFTV GRQSNAVSFG EIRDLYTPFT QESVVSSFSC INYPEEPRKP QNQKRPLSLS ASSGSVTSKP
101: SGSNTSRSKR RKIQHKKVCH VAAEALNSDV WAWRKYGQKP IKGSPYPRGY YRCSTSKGCL ARKQVERNRS DPKMFIVTYT AEHNHPAPTH RNSLAGSTRQ
201: KPSDQQTSKS PTTTIATYSS SPVTSADEFV LPVEDHLAVG DLDGEEDLLS LSDTVVSDDF FDGLEEFAAG DSFSGNSAPA SFDLSWVVNS AATTTGGI

Arabidopsis Description

WRKY22WRKY transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:O04609]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.