Factsheet for PGSC0003DMT400023272

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079360.2.1	Tomato	mitochondrion, nucleus	92.21	93.75
KRH68270	Soybean	nucleus	40.98	39.53
KRG96534	Soybean	nucleus	41.39	35.56
PGSC0003DMT400027378	Potato	nucleus	27.87	32.69
PGSC0003DMT400052637	Potato	nucleus	27.87	26.56
PGSC0003DMT400073267	Potato	nucleus	28.28	23.08
PGSC0003DMT400032091	Potato	nucleus	24.59	19.54
PGSC0003DMT400039061	Potato	nucleus	28.69	16.95
PGSC0003DMT400000215	Potato	nucleus	24.18	16.76
PGSC0003DMT400064256	Potato	nucleus	19.67	14.81
PGSC0003DMT400024632	Potato	nucleus	19.67	14.37
PGSC0003DMT400013632	Potato	nucleus	20.49	14.08
PGSC0003DMT400038986	Potato	nucleus	19.67	13.87
PGSC0003DMT400075531	Potato	nucleus	17.62	13.78
PGSC0003DMT400065506	Potato	nucleus	18.85	13.77
PGSC0003DMT400020517	Potato	nucleus	19.26	13.28
VIT_00s2547g00010.t01	Wine grape	nucleus	11.07	11.74

Protein Annotations

EntrezGene:102597639	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1AI26	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400009014	PGSC:PGSC0003DMG400009014	EnsemblPlants:PGSC0003DMT400023272	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF28
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000294A40A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006349180.1
SEG:seg	:	:	:	:	:

Description

WRKY transcription factor IIe-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400009014]

Coordinates

chr1:+:62801663..62803440

Molecular Weight (calculated)

27216.5 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.817

Length

244 amino acids

Sequence
(BLAST)

001: MGRSKPTKSQ SKTSRLLQPQ FLASKNSSEY SSHVRKMAQK VVITVQMEAK SLKQKNEGPP SDCWSWRKYG QKPIKGSPYP RGYYRCSSSK GCSAKKQVER
101: CSKDASLFVI TYTSSHNHPG PNLPKDSVTQ EQIVDQHVSL EDNNDDDDDN DDTQSCKSPL NSTTTGTSIP QGILEENLFS DSFLGTISYD DFLPLSYPQL
201: MKFPKSELSE ENDFYDELGE LELPPSSTSF AGIFEEAILV DPSS

Best Arabidopsis Sequence Match ( AT2G34830.1 )
(BLAST)

001: MDNFQGDLTD VVRGIGSGHV SPSPGPPEGP SPSSMSPPPT SDLHVEFPSA ATSASCLANP FGDPFVSMKD PLIHLPASYI SGAGDNKSNK SFAIFPKIFE
101: DDHIKSQCSV FPRIKISQSN NIHDASTCNS PAITVSSAAV AASPWGMINV NTTNSPRNCL LVDNNNNTSS CSQVQISSSP RNLGIKRRKS QAKKVVCIPA
201: PAAMNSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA LAGSTRSSSS SSLNPSSKSS
301: TAAATTSPSS RVFQNNSSKD EPNNSNLPSS STHPPFDAAA IKEENVEERQ EKMEFDYNDV ENTYRPELLQ EFQHQPEDFF ADLDELEGDS LTMLLSHSSG
401: GGNMENKTTI PDVFSDFFDD DESSRSL

Arabidopsis Description

WRKY35WRKY DNA-binding protein 35 [Source:TAIR;Acc:AT2G34830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.