Factsheet for PGSC0003DMT400020517

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24240.1	PGSC0003DMT400014123	AT3G56800.1	15733871
AT4G24240.1	PGSC0003DMT400018569	AT3G56800.1	15733871
AT4G24240.1	PGSC0003DMT400046278	AT3G56800.1	15733871
AT4G24240.1	PGSC0003DMT400054299	AT3G56800.1	15733871
AT4G24240.1	PGSC0003DMT400058435	AT3G56800.1	15733871
AT4G24240.1	PGSC0003DMT400070437	AT3G56800.1	15733871
AT4G24240.1	PGSC0003DMT400097662	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078550.2.1	Tomato	nucleus	96.33	97.15
Bra013779.1-P	Field mustard	nucleus	27.97	69.23
VIT_18s0001g10030.t01	Wine grape	nucleus	61.3	68.03
PGSC0003DMT400064256	Potato	nucleus	55.93	61.11
PGSC0003DMT400065506	Potato	nucleus	52.26	55.39
CDY03470	Canola	nucleus	49.72	52.07
AT4G24240.1	Thale cress	nucleus	50.28	50.42
CDY10996	Canola	nucleus	49.15	50.14
Bra019239.1-P	Field mustard	nucleus	49.15	50.0
CDX92626	Canola	nucleus	49.15	50.0
PGSC0003DMT400075531	Potato	nucleus	40.68	46.15
CDY34269	Canola	nucleus	49.44	43.64
PGSC0003DMT400024632	Potato	nucleus	40.4	42.81
PGSC0003DMT400038986	Potato	nucleus	36.44	37.28
PGSC0003DMT400013632	Potato	nucleus	35.59	35.49
PGSC0003DMT400027378	Potato	nucleus	14.41	24.52
PGSC0003DMT400052637	Potato	nucleus	15.82	21.88
PGSC0003DMT400073267	Potato	nucleus	17.8	21.07
PGSC0003DMT400023272	Potato	mitochondrion, nucleus	13.28	19.26
PGSC0003DMT400000215	Potato	nucleus	18.64	18.75
PGSC0003DMT400032091	Potato	nucleus	15.82	18.24
PGSC0003DMT400039061	Potato	nucleus	18.93	16.22

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:ABU49721	ProteinID:ABU49721.1	EMBL:EU056914	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	UniProt:M1ADL8	PFAM:PF03106	PFAM:PF10533	EnsemblPlantsGene:PGSC0003DMG400007947
PGSC:PGSC0003DMG400007947	EnsemblPlants:PGSC0003DMT400020517	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF70	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000294CA15	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg

Description

WRKY transcription factor 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400007947]

Coordinates

chr4:+:67821700..67823360

Molecular Weight (calculated)

38886.0 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.717

Length

354 amino acids

Sequence
(BLAST)

001: MAVDLMTSGY RTDNFSSKME ETAVQEAATA GLQSVEKLIR LLSQSHQNQH QQKPNFQDSS SSSLGKSSVS PDYQAVADAA VNKFKKFISL LDKNRTGHAR
101: FRRGPISSPS PPLPSKPQQL QQLIKNQNPQ IEEIEKPQTS NTKIYCPTPI QRLPPLPHNH LQLVKNGSIE RKEASTTINF ASPSPATSFM SSLTGETESL
201: QQSLSSGFQI TNLSQVSSAG RPPLSTSSFK RKCSSMDDTA LKCSSAGGSS GRCHCPKKRK SRVKRVVRVP AISMKMADIP PDDYSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDPAMLIV TYEGEHNHSH SITETPGAHV LESS

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.