Factsheet for Solyc04g078550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc04g010070.2.1
Solyc05g054980.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24240.1	Solyc01g008950.2.1	AT3G56800.1	15733871
AT4G24240.1	Solyc10g077010.1.1	AT3G56800.1	15733871
AT4G24240.1	Solyc10g081170.1.1	AT3G56800.1	15733871
AT4G24240.1	Solyc11g072240.1.1	AT3G56800.1	15733871
AT4G24240.1	Solyc12g099990.1.1	AT3G56800.1	15733871
AT4G24240.1	Solyc04g010070.2.1	AT5G28900.1	21798944
AT4G24240.1	Solyc05g054980.2.1	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020517	Potato	nucleus	97.15	96.33
Bra013779.1-P	Field mustard	nucleus	28.49	69.93
VIT_18s0001g10030.t01	Wine grape	nucleus	61.25	67.4
Solyc02g093050.2.1	Tomato	nucleus	55.84	60.12
CDY03470	Canola	nucleus	50.71	52.66
AT4G24240.1	Thale cress	nucleus	51.28	50.99
CDY10996	Canola	nucleus	50.14	50.72
Bra019239.1-P	Field mustard	nucleus	50.14	50.57
CDX92626	Canola	nucleus	50.14	50.57
CDY34269	Canola	nucleus	50.43	44.14
Solyc08g006320.2.1	Tomato	nucleus	39.03	41.77
Solyc12g096350.1.1	Tomato	nucleus	38.46	39.94
Solyc09g066010.2.1	Tomato	nucleus	35.33	37.46
Solyc06g008610.2.1	Tomato	nucleus	35.9	36.21
Solyc10g007970.1.1	Tomato	nucleus	15.67	21.57
Solyc10g011910.2.1	Tomato	nucleus	18.8	21.22
Solyc01g079360.2.1	Tomato	mitochondrion, nucleus	13.96	20.42
Solyc02g072190.2.1	Tomato	nucleus	17.66	20.13
Solyc07g055280.2.1	Tomato	nucleus	15.38	19.64
Solyc08g081610.2.1	Tomato	nucleus	16.24	18.81
Solyc01g095100.2.1	Tomato	nucleus	18.8	18.59
Solyc02g021680.2.1	Tomato	nucleus	18.52	17.06

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:K4BUU0	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF70
SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc04g078550.2	EnsemblPlants:Solyc04g078550.2.1	UniParc:UPI0002766C1A	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg	:	:	:

Description

Probable WRKY transcription factor 7 [Source:Projected from Arabidopsis thaliana (AT4G24240) UniProtKB/Swiss-Prot;Acc:Q9STX0]

Coordinates

chr4:+:63259221..63261046

Molecular Weight (calculated)

38487.5 Da

IEP (calculated)

10.158

GRAVY (calculated)

-0.698

Length

351 amino acids

Sequence
(BLAST)

001: MAVDLMTSGY RTDNFSSKME ETAVQEAATA GLQSVEKLIR LLSKSHQNQQ QQQTNFQDSS SGNSSVSADY QAVADAAVNK FKKFISLLDK NRTGHARFRR
101: GPISSLSPPL PSKPQQLQQS IKNQNPQIEE IEKPQASNTK IYCPTPIQRL PPLPHNHLQL VKNGSIERKE ASTTINFASP SPATSFMSSL TGETESLQQS
201: LSSGFQITNL SQVSSAGRPP LSTSSFKRKC SSMDDTALKC SSAGGSSGRC HCPKKRKSRV KRVVRVPAIS MKMADIPPDD YSWRKYGQKP IKGSPHPRGY
301: YKCSSVRGCP ARKHVERALD DAAMLIVTYE GEHNHSHSIT ETPGAHVLES S

Best Arabidopsis Sequence Match ( AT4G24240.1 )
(BLAST)

001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL

Arabidopsis Description

WRKY7Probable WRKY transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.