Factsheet for Solyc04g010070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067920.2.1
Solyc02g088000.2.1
Solyc03g116320.2.1
Solyc03g120440.1.1
Solyc04g007890.2.1
Solyc04g008590.2.1
Solyc07g062080.2.1
Solyc08g006320.2.1
Solyc08g016750.2.1
Solyc10g007500.2.1
Solyc10g054900.1.1
Solyc10g079430.1.1
Solyc12g096350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	Solyc04g007890.2.1	AT1G14900.1	21798944
AT5G28900.1	Solyc03g120440.1.1	AT1G15570.1	21798944
AT5G28900.1	Solyc04g008590.2.1	AT1G30120.1	21798944
AT5G28900.1	Solyc08g016750.2.1	AT1G30120.1	21798944
AT5G28900.1	Solyc07g062080.2.1	AT1G53510.1	21798944
AT5G28900.1	Solyc10g007500.2.1	AT1G53510.1	21798944
AT5G28900.1	Solyc02g088000.2.1	AT3G01180.1	21798944
AT5G28900.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT5G28900.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT5G28900.1	Solyc08g006320.2.1	AT4G31550.1	21798944
AT5G28900.1	Solyc12g096350.1.1	AT4G31550.1	21798944
AT5G28900.1	Solyc10g054900.1.1	AT4G38770.1	21798944
AT5G28900.1	Solyc02g067920.2.1	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97049	Soybean	cytosol	56.22	89.38
GSMUA_Achr8P19010_001	Banana	cytosol	53.25	87.5
Solyc05g054980.2.1	Tomato	cytosol	86.09	86.09
CDY71370	Canola	extracellular	37.11	83.33
KRH68797	Soybean	cytosol	79.96	80.26
KRH34156	Soybean	cytosol	79.41	79.7
KRG92626	Soybean	cytosol	79.04	79.33
GSMUA_AchrUn_...	Banana	cytosol	78.48	78.04
GSMUA_Achr11P...	Banana	cytosol	77.74	77.45
Bra010012.1-P	Field mustard	cytosol	77.18	77.32
CDX86212	Canola	cytosol	77.18	77.32
CDY48668	Canola	cytosol	77.18	77.32
AT5G28850.2	Thale cress	cytosol	75.88	76.31
AT5G28900.1	Thale cress	cytosol	75.88	76.31
CDY57012	Canola	cytosol	74.95	75.23
Bra036126.1-P	Field mustard	cytosol	74.95	75.23
EER94083	Sorghum	cytosol	75.51	75.23
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	75.51	75.23
AT1G54450.1	Thale cress	cytosol	73.65	74.21
CDY00020	Canola	cytosol	74.4	74.12
Zm00001d032708_P009	Maize	cytosol	74.21	74.07
TraesCS1A01G153900.1	Wheat	cytosol	73.65	73.38
TraesCS1B01G171200.1	Wheat	cytosol	73.65	73.38
CDY44814	Canola	cytosol	73.47	73.33
Bra021340.1-P	Field mustard	cytosol	73.47	73.33
HORVU1Hr1G040980.1	Barley	cytosol	73.47	73.2
TraesCS1D01G152300.1	Wheat	cytosol	73.47	73.2
Zm00001d014037_P004	Maize	cytosol	74.03	69.51
KRG97048	Soybean	nucleus	23.75	64.97
Solyc01g067500.2.1	Tomato	cytosol	18.55	20.92

Protein Annotations

EnsemblPlants:Solyc04g010070.2.1	EnsemblPlantsGene:Solyc04g010070.2	Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048
PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	PFAM:PF13202	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018
SEG:seg	SUPFAM:SSF47473	UniParc:UPI0002765E05	UniProt:K4BPG2	MapMan:18.4.24.1.2.4	:

Description

No Description!

Coordinates

chr4:+:3365037..3378848

Molecular Weight (calculated)

62190.8 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.375

Length

539 amino acids

Sequence
(BLAST)

001: MDVDFNGDVA SLDAELLQLP ELSPLAIKTN PFVAEKLFDQ WLSLPDTAAL VKSLIKNAKG GGPLNVSTTS SGTNVVATNS LPSMFPAGST PPLSPRSSSG
101: SPRISKHRAG PSSLGSPLKL INEPAKELIP QFYFQNGRPP PNELKERCLF RINQFFYGHT DGLQMNEFKP ITKEICKLPS FFSAVLFKKI DVDGTGVITR
201: DAFVDYWIHG NMLTKDIATQ MYTILKQPDL RYLVQDDFKP ILRELLATHP GLEFLQSTPE FQERYAETVV YRIFYYVNRS GNGRLTLKEL RRSDLIAAMQ
301: HADEEDDINK VLRYFSYEHF YVIYCKFWEL DTDHDFLIDK ENLIRYGNHA LTYRIVDRIF SQVPRKFTSK VEGKMGYEDF VYFILSEEDK SSEPSLEYWF
401: KCIDMDGNGV ITRNEMQFFY EEQLHRMECM AQEPVLFEDI LCQIVDMVSP ENESYFTLRD LKGSRLSGSV FNILFNLNKF MAFETRDPFL IRQERENPNL
501: TEWDRFAHRE YIRLSMEEDA EDASNGSADV WDESLEAPF

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.