Factsheet for Bra036126.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007528.1-P
Bra008761.1-P
Bra010231.1-P
Bra010727.1-P
Bra010796.1-P
Bra011282.1-P
Bra011893.1-P
Bra014494.1-P
Bra015846.1-P
Bra016654.1-P
Bra017438.1-P
Bra018126.1-P
Bra021487.1-P
Bra023463.1-P
Bra023998.1-P
Bra024870.1-P
Bra026120.1-P
Bra026756.1-P
Bra032361.1-P
Bra038128.1-P
Bra039138.1-P
Bra039676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	Bra017438.1-P	AT1G14900.1	21798944
AT5G28900.1	Bra024870.1-P	AT1G14900.1	21798944
AT5G28900.1	Bra016654.1-P	AT1G15570.1	21798944
AT5G28900.1	Bra026120.1-P	AT1G15570.1	21798944
AT5G28900.1	Bra026756.1-P	AT1G15570.1	21798944
AT5G28900.1	Bra010796.1-P	AT1G30120.1	21798944
AT5G28900.1	Bra032361.1-P	AT1G30120.1	21798944
AT5G28900.1	Bra038128.1-P	AT1G53510.1	21798944
AT5G28900.1	Bra039676.1-P	AT1G53510.1	21798944
AT5G28900.1	Bra015846.1-P	AT1G75400.1	21798944
AT5G28900.1	Bra021487.1-P	AT3G01180.1	21798944
AT5G28900.1	Bra039138.1-P	AT3G01180.1	21798944
AT5G28900.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G28900.1	Bra007528.1-P	AT3G60360.1	21798944
AT5G28900.1	Bra014494.1-P	AT3G60360.1	21798944
AT5G28900.1	Bra010231.1-P	AT4G31550.1	21798944
AT5G28900.1	Bra011282.1-P	AT4G31550.1	21798944
AT5G28900.1	Bra023998.1-P	AT4G31550.1	21798944
AT5G28900.1	Bra010727.1-P	AT4G38770.1	21798944
AT5G28900.1	Bra011893.1-P	AT4G38770.1	21798944
AT5G28900.1	Bra008761.1-P	AT5G14390.1	21798944
AT5G28900.1	Bra023463.1-P	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57012	Canola	cytosol	100.0	100.0
AT5G28900.1	Thale cress	cytosol	87.34	87.5
AT5G28850.2	Thale cress	cytosol	87.34	87.5
Bra010012.1-P	Field mustard	cytosol	87.52	87.36
KRG97049	Soybean	cytosol	54.56	86.43
GSMUA_Achr8P19010_001	Banana	cytosol	51.58	84.45
KRH68797	Soybean	cytosol	76.54	76.54
KRH34156	Soybean	cytosol	75.61	75.61
KRG92626	Soybean	cytosol	75.42	75.42
Solyc04g010070.2.1	Tomato	plastid	75.23	74.95
Bra021340.1-P	Field mustard	cytosol	74.12	73.7
Solyc05g054980.2.1	Tomato	cytosol	73.93	73.65
GSMUA_AchrUn_...	Banana	cytosol	74.3	73.62
GSMUA_Achr11P...	Banana	cytosol	74.12	73.57
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	72.44	71.9
EER94083	Sorghum	cytosol	71.88	71.35
TraesCS1A01G153900.1	Wheat	cytosol	71.51	70.98
HORVU1Hr1G040980.1	Barley	cytosol	71.32	70.79
TraesCS1B01G171200.1	Wheat	cytosol	71.32	70.79
TraesCS1D01G152300.1	Wheat	cytosol	71.32	70.79
Zm00001d032708_P009	Maize	cytosol	70.95	70.56
Zm00001d014037_P004	Maize	cytosol	70.95	66.38
Bra027527.1-P	Field mustard	cytosol	64.43	64.92
Bra030551.1-P	Field mustard	cytosol	64.43	64.55
KRG97048	Soybean	nucleus	21.79	59.39
Bra023686.1-P	Field mustard	nucleus	17.88	19.92
Bra002169.1-P	Field mustard	nucleus	17.69	19.79

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	EnsemblPlantsGene:Bra036126	EnsemblPlants:Bra036126.1
EnsemblPlants:Bra036126.1-P	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	UniProt:M4F4X2	PFAM:PF13202	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	SUPFAM:SSF47473	UniParc:UPI0002541F3B	SEG:seg

Description

AT5G28900 (E=3e-277) | calcium-binding EF hand family protein

Coordinates

chrA09:+:2599037..2601842

Molecular Weight (calculated)

62240.0 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.372

Length

537 amino acids

Sequence
(BLAST)

001: MSMVDAIDMS RVDADLLQLQ EMSSFVLTSK PGFTQSLFDQ WLSLPQAHQQ IATLLHDALA GSTLNVASGS SSAASNSIPS MFPAGSAAPP LSPRSCGSPR
101: MTRQRAGPSN LGSSLKPTTL EPAKEPMPQF YFQNGRPPPS EMKEQCMFRI NHFFYGHIDG LQIQEFKLVT REICKLPSFF STSLFKKIDV NNTGFVTREA
201: FIDYWVNGNM LIMDTTTQIF KILKQQNHNF IVKDDFKPLL KELLATHPGL EFLQTTPEFQ ERYAETVTYR IFYYINRSGN GRLTFRELRR GNLIDAMIHA
301: DQEEDINKVL RYFSYEHFYV IYCKFWELDT DHDFLIDKEN LMRYGNHALT FRIVDRIFSQ VGRKFTSKVE GKMGYEDFVY FILAEEDKSS EPSLEYWFKC
401: IDLDGNGIIT RNEMQFFYEE QLRRMECMAQ EAVLFEDILC QMIDMIGPEN ESYVTLHDLK GSKLSGNVFN ILFNLNKFMA FETRDPFLIR QERENPTLTE
501: WDRFAHREYI RLSMEEDVED ASNGSAEAWD ESLESPF

Best Arabidopsis Sequence Match ( AT5G28850.2 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTSKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDDS SLEAPF

Arabidopsis Description

B''BETASerine/threonine protein phosphatase 2A regulatory subunit B''beta [Source:UniProtKB/Swiss-Prot;Acc:Q5QIT3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.