Factsheet for Bra017438.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04096	Canola	nucleus	85.98	85.98
Bra024870.1-P	Field mustard	nucleus	56.1	48.17
VIT_01s0011g05360.t01	Wine grape	nucleus	53.05	47.8
OQU80556	Sorghum	cytoskeleton, cytosol, nucleus	25.61	47.19
Solyc04g007890.2.1	Tomato	nucleus	51.22	46.93
VIT_15s0021g02830.t01	Wine grape	nucleus	34.15	45.53
AT1G14900.1	Thale cress	nucleus	56.1	45.1
TraesCS5D01G400300.1	Wheat	nucleus	43.9	44.72
TraesCS5B01G395400.1	Wheat	nucleus	43.29	44.1
HORVU5Hr1G095410.1	Barley	nucleus	36.59	43.8
Zm00001d050368_P001	Maize	nucleus	46.95	42.08
PGSC0003DMT400075917	Potato	nucleus	48.17	42.02
TraesCS5A01G390500.1	Wheat	nucleus	43.9	41.62
Os08t0428800-00	Rice	nucleus	45.12	41.57
GSMUA_Achr6P04240_001	Banana	nucleus	40.85	38.29
GSMUA_Achr9P28490_001	Banana	nucleus	31.71	38.24
Zm00001d032239_P001	Maize	plastid	44.51	37.82
HORVU5Hr1G060800.2	Barley	nucleus	42.07	37.5
EES15017	Sorghum	nucleus	45.12	37.37
TraesCS5D01G211400.1	Wheat	nucleus	40.85	35.45
TraesCS5A01G204700.1	Wheat	nucleus	40.85	35.45
GSMUA_Achr5P24470_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.27	35.04
TraesCS5B01G203600.1	Wheat	nucleus	40.24	34.92
Os09t0402100-01	Rice	nucleus	45.12	34.74
GSMUA_Achr7P10310_001	Banana	nucleus	35.98	34.71
GSMUA_Achr7P12540_001	Banana	cytosol	29.27	34.53
VIT_15s0024g01410.t01	Wine grape	plastid	41.46	31.63
VIT_09s0018g01850.t01	Wine grape	plastid	40.85	31.16
VIT_13s0074g00560.t01	Wine grape	plastid	39.02	29.77
GSMUA_Achr5P05890_001	Banana	cytosol	45.73	28.85
OQU78653	Sorghum	cytosol, mitochondrion, nucleus	26.83	28.03
Zm00001d020412_P001	Maize	cytosol	36.59	19.54
EER98875	Sorghum	nucleus	36.59	18.46
Bra018744.1-P	Field mustard	nucleus	34.76	14.07
Bra022274.1-P	Field mustard	nucleus	28.66	10.51
Bra021288.1-P	Field mustard	nucleus	28.05	10.11
Bra022273.1-P	Field mustard	nucleus	26.83	8.73
Bra032258.1-P	Field mustard	nucleus, plastid	31.71	8.62
Bra001696.1-P	Field mustard	nucleus	30.49	8.09

Protein Annotations

Gene3D:1.10.10.10	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra017438	EnsemblPlants:Bra017438.1	EnsemblPlants:Bra017438.1-P
GO:GO:0000785	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006334
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
InterPro:HMGA	InterPro:HMGA_plant	InterPro:Histone_H1/H5_H15	InterPro:IPR005818	InterPro:IPR036388	UniProt:M4DLQ7
PFAM:PF00538	PFAM:PF02178	PRINTS:PR00929	PRINTS:PR00930	PFscan:PS51504	PANTHER:PTHR11467
PANTHER:PTHR11467:SF49	SMART:SM00384	SMART:SM00526	SUPFAM:SSF46785	UniParc:UPI000254233E	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

AT1G14900 (E=2e-037) HMGA | HMGA (HIGH MOBILITY GROUP A); DNA binding

Coordinates

chrA09:-:15377770..15378355

Molecular Weight (calculated)

17688.2 Da

IEP (calculated)

10.739

GRAVY (calculated)

-0.860

Length

164 amino acids

Sequence
(BLAST)

001: MFEMATEQHP ISLPPYPQMI MAAIEASNDA NGCNKTAIAK HIESTQSILP PSHSTLLNYH LNQMKQSGQI VMVKNNYMKP DPHAPPKRGR GRPPKPQGDS
101: SHVAIPAPSV SPPRTRGRPP KVNDSSSEAK SKVSPSVSGT PRGRPPKKAK KESEKVKEAT SVSA

Best Arabidopsis Sequence Match ( AT1G14900.1 )
(BLAST)

001: MAFDLHHGSA SDTHSSELPS FSLPPYPQMI MEAIESLNDK NGCNKTTIAK HIESTQQTLP PSHMTLLSYH LNQMKKTGQL IMVKNNYMKP DPDAPPKRGR
101: GRPPKQKTQA ESDAAAAAVV AATVVSTDPP RSRGRPPKPK DPSEPPQEKV ITGSGRPRGR PPKRPRTDSE TVAAPEPAAQ ATGERRGRGR PPKVKPTVVA
201: PVGC

Arabidopsis Description

HMGAHMG-Y-related protein A [Source:UniProtKB/Swiss-Prot;Acc:Q43386]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.